An expression atlas of human primary cells: inference of gene function from coexpression networks

Indian Hedgehog signalling triggers Nkx3.2 protein degradation during chondrocyte maturation

(2012) Seung-Won Choi et al.   BIOCHEMICAL JOURNAL

RNA-Seq Atlas—a reference database for gene expression profiling in normal tissue by next-generation sequencing

(2012) Markus Krupp et al.   BIOINFORMATICS

Spi-B is critical for plasmacytoid dendritic cell function and development

(2012) I. Sasaki et al.   BLOOD

A gene expression atlas of the domestic pig

(2012) Tom C Freeman et al.   BMC BIOLOGY

Identification of novel mitosis regulators through data mining with human centromere/kinetochore proteins as group queries

(2012) Aaron R Tipton et al.   BMC CELL BIOLOGY

Cell-Context Dependent TCF/LEF Expression and Function: Alternative Tales of Repression, De-Repression and Activation Potentials

(2012) Catherine D. Mao et al.   CRITICAL REVIEWS IN EUKARYOTIC GENE EXPRESSION

FGF signaling transforms non-neural ectoderm into neural crest

(2012) Nathan Yardley et al.   DEVELOPMENTAL BIOLOGY

Plenary Perspective: The complexity of constitutive and inducible gene expression in mononuclear phagocytes

(2012) D. A. Hume   JOURNAL OF LEUKOCYTE BIOLOGY

Desert Hedgehog Links Transcription Factor Sox10 to Perineurial Development

(2012) M. Kuspert et al.   JOURNAL OF NEUROSCIENCE

eMouseAtlas, EMAGE, and the spatial dimension of the transcriptome

(2012) Chris Armit et al.   MAMMALIAN GENOME

High-resolution gene expression atlases for adult and developing mouse brain and spinal cord

(2012) Alex M. Henry et al.   MAMMALIAN GENOME

The Sam68 STAR RNA-Binding Protein Regulates mTOR Alternative Splicing during Adipogenesis

(2012) Marc-Étienne Huot et al.   MOLECULAR CELL

IFITM3 restricts the morbidity and mortality associated with influenza

(2012) Aaron R. Everitt et al.   NATURE

Deciphering the transcriptional network of the dendritic cell lineage

(2012) Jennifer C Miller et al.   NATURE IMMUNOLOGY

Gene-expression profiles and transcriptional regulatory pathways that underlie the identity and diversity of mouse tissue macrophages

(2012) Emmanuel L Gautier et al.   NATURE IMMUNOLOGY

Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages

(2012) K. Schroder et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

“Guilt by Association” Is the Exception Rather Than the Rule in Gene Networks

(2012) Jesse Gillis et al.   PLoS Computational Biology

An atlas of bovine gene expression reveals novel distinctive tissue characteristics and evidence for improving genome annotation

(2012) Gregory P Harhay et al.   GENOME BIOLOGY

The transcription factor Erg regulates expression of histone deacetylase 6 and multiple pathways involved in endothelial cell migration and angiogenesis

(2011) G. M. Birdsey et al.   BLOOD

From stem cell to red cell: regulation of erythropoiesis at multiple levels by multiple proteins, RNAs, and chromatin modifications

(2011) S. M. Hattangadi et al.   BLOOD

Network calisthenics

(2011) Jeffrey V. Wong et al.   CELL CYCLE

Multiple faces of FoxM1 transcription factor

(2011) Tanya V. Kalin et al.   CELL CYCLE

A high-resolution molecular atlas of the fetal mouse lower urogenital tract

(2011) Lisa L. Abler et al.   DEVELOPMENTAL DYNAMICS

An atlas of tissue-specific conserved coexpression for functional annotation and disease gene prediction

(2011) Rosario Michael Piro et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

The mononuclear phagocyte system of the pig as a model for understanding human innate immunity and disease

(2011) Lynsey Fairbairn et al.   JOURNAL OF LEUKOCYTE BIOLOGY

p63 and p73 Isoform Expression in Non-small Cell Lung Cancer and Corresponding Morphological Normal Lung Tissue

(2011) Marco Lo Iacono et al.   Journal of Thoracic Oncology

A Transcriptomic Atlas of Mouse Neocortical Layers

(2011) T. Grant Belgard et al.   NEURON

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

(2011) Graciana Diez-Roux et al.   PLOS BIOLOGY

Gene enrichment profiles reveal T-cell development, differentiation, and lineage-specific transcription factors including ZBTB25 as a novel NF-AT repressor

(2010) Y. Benita et al.   BLOOD

Co-expression of FBN1 with mesenchyme-specific genes in mouse cell lines: implications for phenotypic variability in Marfan syndrome

(2010) Kim M Summers et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Replication of top markers of a genome-wide association study in multiple sclerosis in Spain

(2010) M L Cavanillas et al.   GENES AND IMMUNITY

Functional clustering and lineage markers: Insights into cellular differentiation and gene function from large-scale microarray studies of purified primary cell populations

(2010) David A. Hume et al.   GENOMICS

Alternative Activation of Macrophages: Mechanism and Functions

(2010) Siamon Gordon et al.   IMMUNITY

Origin and development of dendritic cells

(2010) Kang Liu et al.   IMMUNOLOGICAL REVIEWS

E2f1–3 Are Critical for Myeloid Development

(2010) Prashant Trikha et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Human adenosine deaminase 2 induces differentiation of monocytes into macrophages and stimulates proliferation of T helper cells and macrophages

(2010) A. V. Zavialov et al.   JOURNAL OF LEUKOCYTE BIOLOGY

Clinical microfluidics for neutrophil genomics and proteomics

(2010) Kenneth T Kotz et al.   NATURE MEDICINE

A genomic atlas of mouse hypothalamic development

(2010) Tomomi Shimogori et al.   NATURE NEUROSCIENCE

Retinoid X receptor gamma signaling accelerates CNS remyelination

(2010) Jeffrey K Huang et al.   NATURE NEUROSCIENCE

Network visualization and analysis of gene expression data using BioLayout Express3D

(2009) Athanasios Theocharidis et al.   Nature Protocols

A pattern recognition approach to infer time-lagged genetic interactions

(2008) Cheng-Long Chuang et al.   BIOINFORMATICS

Functional Annotation and Identification of Candidate Disease Genes by Computational Analysis of Normal Tissue Gene Expression Data

(2008) Laura Miozzi et al.   PLoS One

Prediction of Human Disease Genes by Human-Mouse Conserved Coexpression Analysis

(2008) Ugo Ala et al.   PLoS Computational Biology