MGcV: the microbial genomic context viewer for comparative genome analysis

GeneclusterViz: a tool for conserved gene cluster visualization, exploration and analysis

(2012) V. R. Pejaver et al.   BIOINFORMATICS

PePPER: a webserver for prediction of prokaryote promoter elements and regulons

(2012) Anne de Jong et al.   BMC GENOMICS

Comparative genome analysis of central nitrogen metabolism and its control by GlnR in the class Bacilli

(2012) Tom Kormelink et al.   BMC GENOMICS

Absynte: a web tool to analyze the evolution of orthologous archaeal and bacterial gene clusters

(2011) A. Despalins et al.   BIOINFORMATICS

Comparative analyses imply that the enigmatic sigma factor 54 is a central controller of the bacterial exterior

(2011) Christof Francke et al.   BMC GENOMICS

Complete Resequencing and Reannotation of the Lactobacillus plantarum WCFS1 Genome

(2011) R. J. Siezen et al.   JOURNAL OF BACTERIOLOGY

β-Galactosidase with transgalactosylation activity from Lactobacillus fermentum K4

(2011) G.X. Liu et al.   JOURNAL OF DAIRY SCIENCE

Role of GlnR in Acid-Mediated Repression of Genes Encoding Proteins Involved in Glutamine and Glutamate Metabolism in Streptococcus mutans

(2010) P. M. Chen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes

(2010) Nancy Y. Yu et al.   BIOINFORMATICS

The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell

(2010) T. Junier et al.   BIOINFORMATICS

FITBAR: a web tool for the robust prediction of prokaryotic regulons

(2010) Jacques Oberto   BMC BIOINFORMATICS

The future of molecular evolution

(2010) Antony M Dean   EMBO REPORTS

A protocol for generating a high-quality genome-scale metabolic reconstruction

(2010) Ines Thiele et al.   Nature Protocols

Prediction of metabolic fluxes by incorporating genomic context and flux-converging pattern analyses

(2010) J. M. Park et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Galacto-oligosaccharide production using microbial β-galactosidase: current state and perspectives

(2009) Ah-Reum Park et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Tmod: toolbox of motif discovery

(2009) H. Sun et al.   BIOINFORMATICS

WebGBrowse--a web server for GBrowse

(2009) R. Podicheti et al.   BIOINFORMATICS

GIMSAN: a Gibbs motif finder with significance analysis

(2008) P. Ng et al.   BIOINFORMATICS

PSAT: A web tool to compare genomic neighborhoods of multiple prokaryotic genomes

(2008) Christine Fong et al.   BMC BIOINFORMATICS

A generic approach to identify Transcription Factor-specific operator motifs; Inferences for LacI-family mediated regulation in Lactobacillus plantarum WCFS1

(2008) Christof Francke et al.   BMC GENOMICS

The identification of response regulator-specific binding sites reveals new roles of two-component systems in Bacillus cereus and closely related low-GC Gram-positives

(2008) Mark de Been et al.   ENVIRONMENTAL MICROBIOLOGY