Evolutionary dynamics of copy number variation in pig genomes in the context of adaptation and domestication

Copy number variation in the porcine genome inferred from a 60 k SNP BeadChip

(2012) Yuliaxis Ramayo-Caldas et al.   BMC GENOMICS

Identification of genome-wide copy number variations among diverse pig breeds by array CGH

(2012) Yan Li et al.   BMC GENOMICS

A genome-wide detection of copy number variations using SNP genotyping arrays in swine

(2012) Jiying Wang et al.   BMC GENOMICS

A comprehensive survey of copy number variation in 18 diverse pig populations and identification of candidate copy number variable genes associated with complex traits

(2012) Congying Chen et al.   BMC GENOMICS

Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes

(2012) Samuel O Oyola et al.   BMC GENOMICS

A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers

(2012) Michael Quail et al.   BMC GENOMICS

The complete swine olfactory subgenome: expansion of the olfactory gene repertoire in the pig genome

(2012) Dinh Nguyen et al.   BMC GENOMICS

Evolution of Human-Specific Neural SRGAP2 Genes by Incomplete Segmental Duplication

(2012) Megan Y. Dennis et al.   CELL

Copy number variation of individual cattle genomes using next-generation sequencing

(2012) D. M. Bickhart et al.   GENOME RESEARCH

Domesticated species form a treasure-trove for molecular characterization of Mendelian traits by exploiting the specific genetic structure of these species in across-breed genome wide association studies

(2012) H-J Megens et al.   HEREDITY

Analyses of pig genomes provide insight into porcine demography and evolution

(2012) Martien A. M. Groenen et al.   NATURE

Genome-Wide Analysis of the World's Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent Selection

(2012) James W. Kijas et al.   PLOS BIOLOGY

Mapping copy number variation by population-scale genome sequencing

(2011) Ryan E. Mills et al.   NATURE

Genome structural variation discovery and genotyping

(2011) Can Alkan et al.   NATURE REVIEWS GENETICS

Ensembl 2012

(2011) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

Structural Variation in the Human Genome and its Role in Disease

(2010) Paweł Stankiewicz et al.   Annual Review of Medicine

srGAP2 Arginine Methylation Regulates Cell Migration and Cell Spreading through Promoting Dimerization

(2010) Shaoshi Guo et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The F-BAR Domain of srGAP2 Induces Membrane Protrusions Required for Neuronal Migration and Morphogenesis

(2009) Sabrice Guerrier et al.   CELL

Copy number variations in East-Asian population and their evolutionary and functional implications

(2009) S.-H. Yim et al.   HUMAN MOLECULAR GENETICS

The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells

(2009) Patrick Cahan et al.   NATURE GENETICS

Personalized copy number and segmental duplication maps using next-generation sequencing

(2009) Can Alkan et al.   NATURE GENETICS

Design of a High Density SNP Genotyping Assay in the Pig Using SNPs Identified and Characterized by Next Generation Sequencing Technology

(2009) Antonio M. Ramos et al.   PLoS One

The origins and impact of primate segmental duplications

(2009) Tomas Marques-Bonet et al.   TRENDS IN GENETICS

A gene duplication affecting expression of the ovine ASIP gene is responsible for white and black sheep

(2008) B. J. Norris et al.   GENOME RESEARCH

A critical analysis of disease-associated DNA polymorphisms in the genes of cattle, goat, sheep, and pig

(2008) Eveline M. Ibeagha-Awemu et al.   MAMMALIAN GENOME

Mapping and sequencing of structural variation from eight human genomes

(2008) Jeffrey M. Kidd et al.   NATURE

Integrated detection and population-genetic analysis of SNPs and copy number variation

(2008) Steven A McCarroll et al.   NATURE GENETICS