Transcriptional profiling of the Arabidopsis abscission mutant hae hsl2 by RNA-Seq

Petal abscission in rose is associated with the differential expression of two ethylene-responsive xyloglucan endotransglucosylase/hydrolase genes, RbXTH1 and RbXTH2

(2011) A. P. Singh et al.   JOURNAL OF EXPERIMENTAL BOTANY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Statistical Design and Analysis of RNA Sequencing Data

(2010) P. L. Auer et al.   GENETICS

Three Arabidopsis Fatty Acyl-Coenzyme A Reductases, FAR1, FAR4, and FAR5, Generate Primary Fatty Alcohols Associated with Suberin Deposition

(2010) F. Domergue et al.   PLANT PHYSIOLOGY

Robin: An Intuitive Wizard Application for R-Based Expression Microarray Quality Assessment and Analysis

(2010) M. Lohse et al.   PLANT PHYSIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE1 (ADPG1), ADPG2, and QUARTET2 Are Polygalacturonases Required for Cell Separation during Reproductive Development in Arabidopsis

(2009) M. Ogawa et al.   PLANT CELL

Silencing polygalacturonase expression inhibits tomato petiole abscission

(2008) C.-Z. Jiang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Dual control of nuclear EIN3 by bifurcate MAPK cascades in C2H4 signalling

(2008) Sang-Dong Yoo et al.   NATURE

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

The EPIP Peptide of INFLORESCENCE DEFICIENT IN ABSCISSION Is Sufficient to Induce Abscission in Arabidopsis through the Receptor-Like Kinases HAESA and HAESA-LIKE2

(2008) G.-E. Stenvik et al.   PLANT CELL

Eleven Golden Rules of Quantitative RT-PCR

(2008) M. K. Udvardi et al.   PLANT CELL

Stamen Abscission Zone Transcriptome Profiling Reveals New Candidates for Abscission Control: Enhanced Retention of Floral Organs in Transgenic Plants Overexpressing Arabidopsis ZINC FINGER PROTEIN2

(2008) S. Cai et al.   PLANT PHYSIOLOGY

Mitogen-Activated Protein Kinase Cascades and Ethylene: Signaling, Biosynthesis, or Both?

(2008) A. Hahn et al.   PLANT PHYSIOLOGY

Regulation of floral organ abscission in Arabidopsis thaliana

(2008) S. K. Cho et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ethylene induced cotton leaf abscission is associated with higher expression of cellulase (GhCel1) and increased activities of ethylene biosynthesis enzymes in abscission zone

(2007) Amita Mishra et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY