Transcriptional profiling of sweetpotato (Ipomoea batatas) roots indicates down-regulation of lignin biosynthesis and up-regulation of starch biosynthesis at an early stage of storage root formation

The peach (Prunus persica L. Batsch) genome harbours 10 KNOX genes, which are differentially expressed in stem development, and the class 1 KNOPE1 regulates elongation and lignification during primary growth

(2012) Giulio Testone et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcriptome analysis of rice mature root tissue and root tips in early development by massive parallel sequencing

(2012) T. Kyndt et al.   JOURNAL OF EXPERIMENTAL BOTANY

De novo sequencing and a comprehensive analysis of purple sweet potato (Impomoea batatas L.) transcriptome

(2012) Fuliang Xie et al.   PLANTA

Digital Gene Expression Analysis Based on Integrated De Novo Transcriptome Assembly of Sweet Potato [Ipomoea batatas (L.) Lam.]

(2012) Xiang Tao et al.   PLoS One

Global characterization of the root transcriptome of a wild species of rice, Oryza longistaminata, by deep sequencing

(2011) Haiyuan Yang et al.   BMC GENOMICS

De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)

(2011) Zhangying Wang et al.   BMC GENOMICS

Analysis of Leaf and Root Transcriptomes of Soil-Grown Avena barbata Plants

(2011) Stéphanie M. Swarbreck et al.   PLANT AND CELL PHYSIOLOGY

Characterization of Transcriptome Remodeling during Cambium Formation Identifies MOL1 and RUL1 As Opposing Regulators of Secondary Growth

(2011) Javier Agusti et al.   PLoS Genetics

A sweetpotato gene index established by de novo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers

(2010) Roland Schafleitner et al.   BMC GENOMICS

Metabolic engineering of the plant primary–secondary metabolism interface

(2010) Asaph Aharoni et al.   CURRENT OPINION IN BIOTECHNOLOGY

SRD1 is involved in the auxin-mediated initial thickening growth of storage root by enhancing proliferation of metaxylem and cambium cells in sweetpotato (Ipomoea batatas)

(2010) Seol Ah Noh et al.   JOURNAL OF EXPERIMENTAL BOTANY

Expression Profiling of Cassava Storage Roots Reveals an Active Process of Glycolysis/GluconeogenesisF

(2010) Jun Yang et al.   Journal of Integrative Plant Biology

Expression of sweet potato cysteine protease SPCP2 altered developmental characteristics and stress responses in transgenic Arabidopsis plants

(2010) Hsien-Jung Chen et al.   JOURNAL OF PLANT PHYSIOLOGY

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

AFLP-based transcript profiling for cassava genome-wide expression analysis in the onset of storage root formation

(2010) Punchapat Sojikul et al.   PHYSIOLOGIA PLANTARUM

Sulfite Reductase Defines a Newly Discovered Bottleneck for Assimilatory Sulfate Reduction and Is Essential for Growth and Development inArabidopsis thaliana

(2010) Muhammad Sayyar Khan et al.   PLANT CELL

Cross Talk between the KNOX and Ethylene Pathways Is Mediated by Intron-Binding Transcription Factors in Barley

(2010) M. Osnato et al.   PLANT PHYSIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Mutations in the cinnamate 4-hydroxylase gene impact metabolism, growth and development in Arabidopsis

(2009) Anthony L. Schilmiller et al.   PLANT JOURNAL

IbMADS1 (Ipomoea batatas MADS-box 1 gene) is Involved in Tuberous Root Initiation in Sweet Potato (Ipomoea batatas)

(2008) Amy Tsu Ku et al.   ANNALS OF BOTANY

Ontologizer 2.0--a multifunctional tool for GO term enrichment analysis and data exploration

(2008) S. Bauer et al.   BIOINFORMATICS

Lignin engineering

(2008) R VANHOLME et al.   CURRENT OPINION IN PLANT BIOLOGY

Expression of class I knotted1-like homeobox genes in the storage roots of sweetpotato (Ipomoea batatas)

(2008) Masaru Tanaka et al.   JOURNAL OF PLANT PHYSIOLOGY

Characteristic and Expression Analysis of a Metallothionein Gene, OsMT2b, Down-Regulated by Cytokinin Suggests Functions in Root Development and Seed Embryo Germination of Rice

(2008) J. Yuan et al.   PLANT PHYSIOLOGY