Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs

Evaluation of the porcineACSL4gene as a candidate gene for meat quality traits in pigs

(2012) J. Corominas et al.   ANIMAL GENETICS

Copy number variation in the genomes of domestic animals

(2012) A. Clop et al.   ANIMAL GENETICS

SNP calling by sequencing pooled samples

(2012) Emanuele Raineri et al.   BMC BIOINFORMATICS

Gene structure and expression of serotonin receptor HTR2C in hypothalamic samples from infanticidal and control sows

(2012) Claire R Quilter et al.   BMC NEUROSCIENCE

Analyses of pig genomes provide insight into porcine demography and evolution

(2012) Martien A. M. Groenen et al.   NATURE

Regions of Homozygosity in the Porcine Genome: Consequence of Demography and the Recombination Landscape

(2012) Mirte Bosse et al.   PLoS Genetics

Animal models got you puzzled?: think pig

(2011) Eric M. Walters et al.   Annals of the New York Academy of Sciences

ART: a next-generation sequencing read simulator

(2011) Weichun Huang et al.   BIOINFORMATICS

Balancing selection is common in the extended MHC region but most alleles with opposite risk profile for autoimmune diseases are neutrally evolving

(2011) Rachele Cagliani et al.   BMC EVOLUTIONARY BIOLOGY

Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection

(2011) R. D. George et al.   GENOME RESEARCH

Evolutionary genetic dissection of human interferons

(2011) Jérémy Manry et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Evolutionary and Functional Evidence for Positive Selection at the Human CD5 Immune Receptor Gene

(2011) E. Carnero-Montoro et al.   MOLECULAR BIOLOGY AND EVOLUTION

Joint analysis of demography and selection in population genetics: where do we stand and where could we go?

(2011) JUNRUI LI et al.   MOLECULAR ECOLOGY

Genome structural variation discovery and genotyping

(2011) Can Alkan et al.   NATURE REVIEWS GENETICS

Genome-Wide Footprints of Pig Domestication and Selection Revealed through Massive Parallel Sequencing of Pooled DNA

(2011) Andreia J. Amaral et al.   PLoS One

Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor

(2010) William McLaren et al.   BIOINFORMATICS

Brain gene expression in relation to fearfulness in female red junglefowl (Gallus gallus)

(2010) M. Jöngren et al.   GENES BRAIN AND BEHAVIOR

To Pool, or Not to Pool?

(2010) David J. Cutler et al.   GENETICS

The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples

(2010) Andreas Futschik et al.   GENETICS

Signatures of positive selection apparent in a small sample of human exomes

(2010) J. A. Tennessen et al.   GENOME RESEARCH

mrsFAST: a cache-oblivious algorithm for short-read mapping

(2010) Faraz Hach et al.   NATURE METHODS

Diversity of Human Copy Number Variation and Multicopy Genes

(2010) Peter H. Sudmant et al.   SCIENCE

Sequencing and analysis of an Irish human genome

(2010) Pin Tong et al.   GENOME BIOLOGY

Toward a better understanding of pig behavior and pig welfare

(2010) Apisit Kittawornrat et al.   ANIMAL HEALTH RESEARCH REVIEWS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Application of massive parallel sequencing to whole genome SNP discovery in the porcine genome

(2009) Andreia J Amaral et al.   BMC GENOMICS

Contrasting Mode of Evolution at a Coat Color Locus in Wild and Domestic Pigs

(2009) Meiying Fang et al.   PLoS Genetics

Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals

(2008) I. Hellmann et al.   GENOME RESEARCH

Overdominance in the Human Genome and Olfactory Receptor Activity

(2008) S. Alonso et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multilocus analysis of variation using a large empirical data set: phenylpropanoid pathway genes in Arabidopsis thaliana

(2008) S. E RAMOS-ONSINS et al.   MOLECULAR ECOLOGY

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries

(2008) Curtis P Van Tassell et al.   NATURE METHODS