The complete mitochondrial genome of Flustra foliacea (Ectoprocta, Cheilostomata) - compositional bias affects phylogenetic analyses of lophotrochozoan relationships

Parametric and non-parametric masking of randomness in sequence alignments can be improved and leads to better resolved trees

(2010) Patrick Kück et al.   Frontiers in Zoology

Compositional Heterogeneity and Phylogenomic Inference of Metazoan Relationships

(2010) M. P. Nesnidal et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic relationships within the lophophorate lineages (Ectoprocta, Brachiopoda and Phoronida)

(2010) Bernhard Hausdorf et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

When phylogenetic assumptions are violated: base compositional heterogeneity and among-site rate variation in beetle mitochondrial phylogenomics

(2010) HOJUN SONG et al.   SYSTEMATIC ENTOMOLOGY

On the phylogenetic position of Myzostomida: Can 77 genes get it wrong?

(2009) Christoph Bleidorn et al.   BMC EVOLUTIONARY BIOLOGY

Phylogeny and mitochondrial gene order variation in Lophotrochozoa in the light of new mitogenomic data from Nemertea

(2009) Lars Podsiadlowski et al.   BMC GENOMICS

Complete mitochondrial genome of Bugula neritina (Bryozoa, Gymnolaemata, Cheilostomata): phylogenetic position of Bryozoa and phylogeny of lophophorates within the Lophotrochozoa

(2009) Kuem Jang et al.   BMC GENOMICS

The complete mitochondrial genome of Watersipora subtorquata (Bryozoa, Gymnolaemata, Ctenostomata) with phylogenetic consideration of Bryozoa

(2009) Ming'an Sun et al.   GENE

Bilaterian Phylogeny: A Broad Sampling of 13 Nuclear Genes Provides a New Lophotrochozoa Phylogeny and Supports a Paraphyletic Basal Acoelomorpha

(2009) J. Paps et al.   MOLECULAR BIOLOGY AND EVOLUTION

The first comprehensive molecular phylogeny of Bryozoa (Ectoprocta) based on combined analyses of nuclear and mitochondrial genes

(2009) Judith Fuchs et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

MtZoa: A general mitochondrial amino acid substitutions model for animal evolutionary studies

(2009) Omar Rota-Stabelli et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Nearly complete rRNA genes assembled from across the metazoan animals: Effects of more taxa, a structure-based alignment, and paired-sites evolutionary models on phylogeny reconstruction

(2009) Jon Mallatt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Assessing the root of bilaterian animals with scalable phylogenomic methods

(2009) A. Hejnol et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Lophotrochozoa internal phylogeny: new insights from an up-to-date analysis of nuclear ribosomal genes

(2009) J. Paps et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Monte Carlo Approach Successfully Identifies Randomness in Multiple Sequence Alignments : A More Objective Means of Data Exclusion

(2009) Bernhard Misof et al.   SYSTEMATIC BIOLOGY

Nonstationary Evolution and Compositional Heterogeneity in Beetle Mitochondrial Phylogenomics

(2009) Nathan C. Sheffield et al.   SYSTEMATIC BIOLOGY

EST based phylogenomics of Syndermata questions monophyly of Eurotatoria

(2008) Alexander Witek et al.   BMC EVOLUTIONARY BIOLOGY

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS

Phylogenetic Position of Nemertea Derived from Phylogenomic Data

(2008) T. H. Struck et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Site- and Time-Heterogeneous Model of Amino Acid Replacement

(2008) Samuel Blanquart et al.   MOLECULAR BIOLOGY AND EVOLUTION

Complete nucleotide sequences of mitochondrial genomes of two solitary entoprocts, Loxocorone allax and Loxosomella aloxiata: Implications for lophotrochozoan phylogeny

(2008) Shin-ichi Yokobori et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Broad phylogenomic sampling improves resolution of the animal tree of life

(2008) Casey W. Dunn et al.   NATURE

Back in time: a new systematic proposal for the Bilateria

(2008) J. Baguna et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Improvement of molecular phylogenetic inference and the phylogeny of Bilateria

(2008) N. Lartillot et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenomic analyses of lophophorates (brachiopods, phoronids and bryozoans) confirm the Lophotrochozoa concept

(2008) M. Helmkampf et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY

Multigene analysis of lophophorate and chaetognath phylogenetic relationships

(2007) Martin Helmkampf et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION