4.7 Article

Chromosome Y variants from different inbred mouse strains are linked to differences in the morphologic and molecular responses of cardiac cells to postpubertal testosterone

期刊

BMC GENOMICS
卷 10, 期 -, 页码 -

出版社

BMC
DOI: 10.1186/1471-2164-10-150

关键词

-

资金

  1. Canadian Institutes for Health Research (CIHR) [MOP-64391]
  2. NIGMS Centers of Excellence in Systems Biology Program [GM076468]

向作者/读者索取更多资源

Background: We have reported previously that when chromosome Y (chrY) from the mouse strain C57BL/6J (ChrY(C57)) was substituted for that of A/J mice (ChrY(A)), cardiomyocytes from the resulting chromosome substitution C57BL/6J-chrY(A) strain were smaller than that of their C57BL/6J counterparts. In reverse, when chrY(A) from A/J mice was substituted for that of chrY(C57), cardiomyocytes from the resulting A/J-chrY(C57) strain were larger than in their A/J counterparts. We further used these strains to test whether: 1) the origin of chrY could also be linked to differences in the profile of gene expression in the hearts of adult male mice, and 2) post-pubertal testosterone could play a role in the differential morphologic and/or molecular effects of chrY(C57) and chrY(A). Results: The increased size of cardiomyocytes from adult male C57BL/6J mice compared to C57BL/6J-chrY(A) resulted from the absence of hypertrophic effects of post-pubertal testosterone on cells from the latter strain. However, gene profiling revealed that the latter effect could not be explained on the basis of an insensitivity of cells from C57BL/6J-chrY(A) to androgens, since even more cardiac genes were affected by post-pubertal testosterone in C57BL/6J-chrY(A) hearts than in C57BL/6J. By testing for interaction between the effects of surgery and strain, we identified 249 interaction genes whose expression was affected by post-pubertal testosterone differentially according to the genetic origin of chrY. These interaction genes were found to be enriched within a limited number of signaling pathways, including: 1) p53 signaling, which comprises the interacting genes Ccnd1, Pten and Cdkn1a that are also potential co-regulators of the androgen receptors, and 2) circadian rhythm, which comprises Arntl/Bmal1, which may in turn regulate cell growth via the control of Cdkn1a. Conclusion: Although post-pubertal testosterone increased the size of cardiomyocytes from male C56BL/6J mice but not that from their C57BL/6J-chrY(A) counterparts, it affected gene expression in the hearts from both strains. However, several cardiac genes responded to post-pubertal testosterone in a strict strain-selective manner, which provides possible mechanisms explaining how chrY may, in part via interference with androgen regulatory events, be linked to morphologic differences of cardiac cells of adult male mice.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.7
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Review Genetics & Heredity

A Multidisciplinary Review of the Inka Imperial Resettlement Policy and Implications for Future Investigations

Roberta Davidson, Lars Fehren-Schmitz, Bastien Llamas

Summary: The rulers of the Inka empire conquered approximately 2 million km(2) of the South American Andes in less than 100 years from 1438-1533 CE. They conducted a systematic resettlement of the Indigenous peoples in the Andes that had been rapidly colonised. Despite incomplete and conflicting details, research from multiple disciplines has provided valuable insights into the empirical reality of the Inka resettlement policy and highlighted the benefits and limitations of each discipline in investigating it.
Review Biochemical Research Methods

Systematic benchmark of ancient DNA read mapping

Adrien Oliva, Raymond Tobler, Alan Cooper, Bastien Llamas, Yassine Souilmi

Summary: This study evaluated the performance of 30 mapping strategies implemented across four different read mapping software using simulated aDNA reads from three different human populations. The results show that specific parameterizations of NovoAlign, BWA-aln, and BWA-mem achieve high mapping precision with low levels of reference bias, especially after filtering out reads with low mapping qualities. The use of an IUPAC reference genome is necessary for achieving unbiased NovoAlign results in aDNA projects with reference population data.

BRIEFINGS IN BIOINFORMATICS (2021)

Article Multidisciplinary Sciences

Stochastic models support rapid peopling of Late Pleistocene Sahul

Corey J. A. Bradshaw, Kasih Norman, Sean Ulm, Alan N. Williams, Chris Clarkson, Joel Chadoeuf, Sam C. Lin, Zenobia Jacobs, Richard G. Roberts, Michael Bird, Laura S. Weyrich, Simon G. Haberle, Sue O'Connor, Bastien Llamas, Tim J. Cohen, Tobias Friedrich, Peter Veth, Matthew Leavesley, Frederik Saltre

Summary: Advanced ecological modelling reveals that Sahul (Australia and New Guinea) was most likely first populated by anatomically modern humans entering via the northwest Sahul Shelf around 50,000 to 75,000 years ago, before rapidly settling the entire continent. The study also suggests that these methods and approaches can inform other global migration debates effectively.

NATURE COMMUNICATIONS (2021)

Article Multidisciplinary Sciences

Ancient mitochondrial genomes from the Argentinian Pampas inform the early peopling of the Southern Cone of South America

Xavier Roca-Rada, Gustavo Politis, Pablo G. Messineo, Nahuel Scheifler, Clara Scabuzzo, Mariela Gonzalez, Kelly M. Harkins, David Reich, Yassine Souilmi, Joao C. Teixeira, Bastien Llamas, Lars Fehren-Schmitz

Summary: Study of mitochondrial genomes from human skeletal remains in the Argentinian Pampas revealed distinct genetic makeup compared to other South Cone of South America (SCSA) populations, with earliest settlers estimated to have arrived in a single and rapid dispersal around 15,600 years ago. Present-day genetic differences between the Pampas and the rest of SCSA are attributed to founder effects, genetic drift, and a partial population replacement around 9,000 years ago.

ISCIENCE (2021)

Article Genetics & Heredity

Mitogenomes Reveal Two Major Influxes of Papuan Ancestry across Wallacea Following the Last Glacial Maximum and Austronesian Contact

Gludhug A. Purnomo, Kieren J. Mitchell, Sue O'Connor, Shimona Kealy, Leonard Taufik, Sophie Schiller, Adam Rohrlach, Alan Cooper, Bastien Llamas, Herawati Sudoyo, Joao C. Teixeira, Raymond Tobler

Summary: The Wallacean islands have a deep history of human presence, but prior population history research has been hindered by patchy archaeological and genetic records. Recent studies show two periods of extensive demographic change in Wallacea, occurring around 15,000 years ago during the Last Glacial Maximum and 3,000 years ago post-Austronesian contact.
Article Health Care Sciences & Services

Validation of an NGS Panel Designed for Detection of Actionable Mutations in Tumors Common in Latin America

Mauricio Salvo, Evelin Gonzalez-Feliu, Jessica Toro, Ivan Gallegos, Ignacio Maureira, Nicolas Miranda-Gonzalez, Olga Barajas, Eva Bustamante, Monica Ahumada, Alicia Colombo, Ricardo Armisen, Camilo Villaman, Carolina Ibanez, Maria Loreto Bravo, Veronica Sanhueza, M. Loreto Spencer, Gonzalo de Toro, Erik Morales, Carolina Bizama, Patricia Garcia, Ana Maria Carrasco, Lorena Gutierrez, Justo Lorenzo Bermejo, Ricardo A. Verdugo, Katherine Marcelain

Summary: The article discusses the barriers to implementing precision oncology in Latin American countries, and presents a method to overcome these barriers through the validation of a 25-gene panel in clinical use.

JOURNAL OF PERSONALIZED MEDICINE (2021)

Article Multidisciplinary Sciences

Ten millennia of hepatitis B virus evolution

Arthur Kocher, Luka Papac, Rodrigo Barquera, Felix M. Key, Maria A. Spyrou, Ron Hubler, Adam B. Rohrlach, Franziska Aron, Raphaela Stahl, Antje Wissgott, Florian van Bommel, Maria Pfefferkorn, Alissa Mittnik, Vanessa Villalba-Mouco, Gunnar U. Neumann, Maite Rivollat, Marieke S. van de Loosdrecht, Kerttu Majander, Rezeda Tukhbatova, Lyazzat Musralina, Ayshin Ghalichi, Sandra Penske, Susanna Sabin, Megan Michel, Joscha Gretzinger, Elizabeth A. Nelson, Tiago Ferraz, Kathrin Nagele, Cody Parker, Marcel Keller, Evelyn K. Guevara, Michal Feldman, Stefanie Eisenmann, Eirini Skourtanioti, Karen Giffin, Guido Alberto Gnecchi-Ruscone, Susanne Friederich, Vittoria Schimmenti, Valery Khartanovich, Marina K. Karapetian, Mikhail S. Chaplygin, Vladimir V. Kufterin, Aleksandr A. Khokhlov, Andrey A. Chizhevsky, Dmitry A. Stashenkov, Anna F. Kochkina, Cristina Tejedor-Rodriguez, Inigo Garcia-Martinez de Lagran, Hector Arcusa-Magallon, Rafael Garrido-Pena, Jose Ignacio Royo-Guillen, Jan Novacek, Stephane Rottier, Sacha Kacki, Sylvie Saintot, Elena Kaverzneva, Andrej B. Belinskiy, Petr Veleminsky, Petr Limbursky, Michal Kostka, Louise Loe, Elizabeth Popescu, Rachel Clarke, Alice Lyons, Richard Mortimer, Antti Sajantila, Yadira Chinique de Armas, Silvia Teresita Hernandez Godoy, Diana Hernandez-Zaragoza, Jessica Pearson, Didier Binder, Philippe Lefranc, Anatoly R. Kantorovich, Vladimir E. Maslov, Luca Lai, Magdalena Zoledziewska, Jessica F. Beckett, Michaela Langova, Tara Ingman, Gabriel Garcia Atienzar, Maria Paz de Miguel Ibanez, Alejandro Romero, Alessandra Sperduti, Sophie Beckett, Susannah J. Salter, Emma D. Zilivinskaya, Dmitry V. Vasil, Kristin von Heyking, Richard L. Burger, Lucy C. Salazar, Luc Amkreutz, Masnav Navruzbekov, Eva Rosenstock, Carmen Alonso-Fernandez, Vladimir Slavchev, Alexey A. Kalmykov, Biaslan Ch Atabiev, Elena Batieva, Micaela Alvarez Calmet, Bastien Llamas, Michael Schultz, Raiko Krauss, Javier Jimenez-Echevarria, Michael Francken, Svetlana Shnaider, Peter de Knijff, Eveline Altena, Katrien Van de Vijver, Lars Fehren-Schmitz, Tiffiny A. Tung, Sandra Losch, Maria Dobrovolskaya, Nikolaj Makarov, Chris Read, Melanie Van Twest, Claudia Sagona, Peter C. Ramsl, Murat Akar, K. Aslihan Yener, Eduardo Carmona Ballestero, Francesco Cucca, Vittorio Mazzarello, Pilar Utrilla, Kurt Rademaker, Eva Fernandez-Dominguez, Douglas Baird, Patrick Semal, Lourdes Marquez-Morfin, Mirjana Roksandic, Hubert Steiner, Domingo Carlos Salazar-Garcia, Natalia Shishlina, Yilmaz Selim Erdal, Fredrik Hallgren, Yavor Boyadzhiev, Kamen Boyadzhiev, Mario Kuessner, Duncan Sayer, Paivi Onkamo, Robin Skeates, Manuel Rojo-Guerra, Alexandra Buzhilova, Elmira Khussainova, Leyla B. Djansugurova, Arman Z. Beisenov, Zainolla Samashev, Ken Massy, Marcello Mannino, Vyacheslav Moiseyev, Kristiina Mannermaa, Oleg Balanovsky, Marie-France Deguilloux, Sabine Reinhold, Svend Hansen, Egor P. Kitov, Miroslav Dobes, Michal Ernee, Harald Meller, Kurt W. Alt, Kay Prufer, Christina Warinner, Stephan Schiffels, Philipp W. Stockhammer, Kirsten Bos, Cosimo Posth, Alexander Herbig, Wolfgang Haak, Johannes Krause, Denise Kuehnert

Summary: Hepatitis B virus (HBV) has been infecting humans for millennia, originating between similar to 20,000 and 12,000 years ago. It was present in European and South American hunter-gatherers during the early Holocene, and later replaced by a lineage disseminated by early farmers after the European Neolithic transition.

SCIENCE (2021)

Article Nutrition & Dietetics

The Association between Fasting Glucose and Sugar Sweetened Beverages Intake Is Greater in Latin Americans with a High Polygenic Risk Score for Type 2 Diabetes Mellitus

Maria Lourdes Lopez-Portillo, Andrea Huidobro, Eduardo Tobar-Calfucoy, Cristian Yanez, Rocio Retamales-Ortega, Macarena Garrido-Tapia, Johanna Acevedo, Fabio Paredes, Vicente Cid-Ossandon, Catterina Ferreccio, Ricardo A. Verdugo

Summary: Chile is one of the largest consumers of sugar-sweetened beverages (SSB) worldwide. This study aims to evaluate the interaction effect between SSB intake and T2D susceptibility on fasting glucose in the Chilean population. The results show that the association between SSB intake and fasting glucose is modified by T2D genetic susceptibility.

NUTRIENTS (2022)

Letter Ecology

Additional evaluations show that specific BWA-aln settings still outperform BWA-mem for ancient DNA data alignment

Adrien Oliva, Raymond Tobler, Bastien Llamas, Yassine Souilmi

ECOLOGY AND EVOLUTION (2021)

Review Genetics & Heredity

The immunogenetic impact of European colonization in the Americas

Evelyn Jane Collen, Angad Singh Johar, Joao C. Teixeira, Bastien Llamas

Summary: This study examines the impacts of imported infectious diseases on the immune system of Indigenous peoples in America during early European contact. The findings suggest that post-contact Indigenous immune adaptation is complex and influenced by various factors, including selection exerted by introduced pathogens.

FRONTIERS IN GENETICS (2022)

Article Microbiology

Individuals with Inflammatory Bowel Disease Have an Altered Gut Microbiome Composition of Fungi and Protozoa

Gina L. Guzzo, Murthy N. Mittinty, Bastien Llamas, Jane M. Andrews, Laura S. Weyrich

Summary: It is known that the bacterial gut microbiome is altered in inflammatory bowel disease (IBD), but the role of eukaryotic microorganisms in IBD is less understood. This study characterized the eukaryotic microbial communities in IBD patients and found higher prevalence of fungi and lower prevalence of protozoa compared to healthy individuals. Disease state, age, and BMI were associated with the prevalence and abundance of these eukaryotes. The study also found that the eukaryotic gut microbiome varied over time in IBD patients who received fecal transplants. The findings suggest that future studies should consider including eukaryotic microbes when characterizing the gut microbiome in IBD.

MICROORGANISMS (2022)

Review Genetics & Heredity

Human Genetic Research in Wallacea and Sahul: Recent Findings and Future Prospects

Leonard Taufik, Joao C. Teixeira, Bastien Llamas, Herawati Sudoyo, Raymond Tobler, Gludhug A. Purnomo

Summary: Genomic sequence data provides novel insights into human ancestry and migratory history. However, many Indigenous populations have been excluded from genomic surveys, hindering a comprehensive understanding of these fundamental questions. This review summarizes key findings from population genetic and phylogeographic studies in Wallacea and Sahul, highlighting their importance in addressing human evolutionary questions.
Article Biochemistry & Molecular Biology

More than dirt: Sedimentary ancient DNA and Indigenous Australia

Dawn A. Lewis, Rebecca Simpson, Azure Hermes, Alex Brown, Bastien Llamas

Summary: The rise of sedimentary ancient DNA studies has provided new possibilities for studying past environments by using sediments to identify organisms. However, managing this substrate in Indigenous Australian contexts requires special considerations due to the cultural significance of the genetic information obtained. Benefit sharing, particularly the integration of Traditional Knowledges, is crucial in ensuring research outcomes are shared equitably with Indigenous communities and that the research is conducted ethically.

MOLECULAR ECOLOGY RESOURCES (2023)

Article Biotechnology & Applied Microbiology

Multi-omics analysis identifies drivers of protein phosphorylation

Tian Zhang, Gregory R. Keele, Isabela Gerdes Gyuricza, Matthew Vincent, Catherine Brunton, Timothy A. Bell, Pablo Hock, Ginger D. Shaw, Steven C. Munger, Fernando Pardo-Manuel de Villena, Martin T. Ferris, Joao A. Paulo, Steven P. Gygi, Gary A. Churchill

Summary: This study quantified phosphopeptides, proteins, and transcripts in mouse tissue samples and identified key regulators of protein phosphorylation, including kinases, phosphatases, cytokines, and genes. The integrative multi-omics analysis provided a powerful tool for identifying regulators of protein phosphorylation.

GENOME BIOLOGY (2023)

Article Cell Biology

Equity, diversity, and inclusion at the Global Alliance for Genomics and Health

Neerjah Skantharajah, Shakuntala Baichoo, Tiffany F. Boughtwood, Esmeralda Casas-Silva, Subhashini Chandrasekharan, Sanjay M. Dave, Khalid A. Fakhro, Aida B. Falcon de Vargas, Sylvia S. Gayle, Vivek K. Gupta, Rachele Hendricks-Sturrup, Ashley E. Hobb, Stephanie Li, Bastien Llamas, Catalina Lopez-Correa, Mavis Machirori, Jorge Melendez-Zajgla, Mareike A. Millner, Angela J. H. Page, Laura D. Pagilone, Maili C. Raven-Adams, Lindsa Smith, Ericka M. Thomas, Judi Kumthini, Manuel Corpas

Summary: The lack of diversity hinders equitable leadership and access to precision medicine in the field of genomics for health. To address this issue, the Global Alliance for Genomics and Health has implemented measures to promote diversity and inclusion in its standards and membership.

CELL GENOMICS (2023)

暂无数据