The linear mitochondrial genome of the quarantine chytrid Synchytrium endobioticum; insights into the evolution and recent history of an obligate biotrophic plant pathogen

Recent Asian origin of chytrid fungi causing global amphibian declines

(2018) Simon J. O’Hanlon et al.   SCIENCE

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Synchytrium microbalum sp. nov. is a saprobic species in a lineage of parasites

(2016) Joyce E. Longcore et al.   Fungal Biology

Animal Mitochondrial DNA as We Do Not Know It: mt-Genome Organization and Evolution in Nonbilaterian Lineages

(2016) Dennis V. Lavrov et al.   Genome Biology and Evolution

Development of Polymorphic Microsatellite Loci for Potato Wart from Next-Generation Sequence Data

(2016) Marie-Claude Gagnon et al.   PHYTOPATHOLOGY

Mitochondrial coding genome analysis of tropical root-knot nematodes (Meloidogyne) supports haplotype based diagnostics and reveals evidence of recent reticulate evolution

(2016) Toon Janssen et al.   Scientific Reports

GRAbB: Selective Assembly of Genomic Regions, a New Niche for Genomic Research

(2016) Balázs Brankovics et al.   PLoS Computational Biology

The Viability of Winter Sporangia of Synchytrium endobioticum (Schilb.) Perc. from Poland

(2015) Jaroslaw Przetakiewicz   AMERICAN JOURNAL OF POTATO RESEARCH

A real-time TaqMan PCR assay to discriminate between pathotype 1 (D1) and non-pathotype 1 (D1) isolates of Synchytrium endobioticum

(2015) Peter J. M. Bonants et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

A linear mitochondrial genome of Cyclospora cayetanensis (Eimeriidae, Eucoccidiorida, Coccidiasina, Apicomplexa) suggests the ancestral start position within mitochondrial genomes of eimeriid coccidia

(2015) Mosun E. Ogedengbe et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Assembling large genomes with single-molecule sequencing and locality-sensitive hashing

(2015) Konstantin Berlin et al.   NATURE BIOTECHNOLOGY

First Report of New Pathotype 39(P1) of Synchytrium endobioticum Causing Potato Wart Disease in Poland

(2015) J. Przetakiewicz   PLANT DISEASE

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Mitochondrial form and function

(2014) Jonathan R. Friedman et al.   NATURE

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Managing potato wart: a review of present research status and future perspective

(2014) Jude Ejikeme Obidiegwu et al.   THEORETICAL AND APPLIED GENETICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogeny of the Genus Synchytrium and the Development of TaqMan PCR Assay for Sensitive Detection of Synchytrium endobioticum in Soil

(2013) Donna S. Smith et al.   PHYTOPATHOLOGY

Reducing assembly complexity of microbial genomes with single-molecule sequencing

(2013) Sergey Koren et al.   GENOME BIOLOGY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Novel type of linear mitochondrial genomes with dual flip-flop inversion system in apicomplexan parasites, Babesia microti and Babesia rodhaini

(2012) Kenji Hikosaka et al.   BMC GENOMICS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Mitochondrial genomes reveal the global phylogeography and dispersal routes of the migratory locust

(2012) CHUAN MA et al.   MOLECULAR ECOLOGY

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Improved real-time PCR assay for detection of the quarantine potato pathogen, Synchytrium endobioticum, in zonal centrifuge extracts from soil and in plants

(2009) Marga P. E. van Gent-Pelzer et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer

(2008) D. Hernandez et al.   GENOME RESEARCH

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes

(2008) M. T. P. Gilbert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA