Complex patterns of divergence among green-sensitive (RH2a) African cichlid opsins revealed by Clade model analyses

Visual Pigment Molecular Evolution in the Trinidadian Pike Cichlid (Crenicichla frenata): A Less Colorful World for Neotropical Cichlids?

(2012) Cameron J. Weadick et al.   MOLECULAR BIOLOGY AND EVOLUTION

Effect of channel mutations on the uptake and release of the retinal ligand in opsin

(2012) R. Piechnick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Divergence in cis-regulatory sequences surrounding the opsin gene arrays of African cichlid fishes

(2011) Kelly E O'Quin et al.   BMC EVOLUTIONARY BIOLOGY

New evidence for the role of heterochrony in the repeated evolution of cichlid opsin expression

(2011) Kelly E. O'Quin et al.   EVOLUTION & DEVELOPMENT

Evolutionary History and Complementary Selective Relaxation of the Duplicated PI Genes in Grasses

(2011) Ruo-Xun Wei et al.   Journal of Integrative Plant Biology

Identification and Characterization of Gene Expression Involved in the Coloration of Cichlid Fish Using Microarray and qRT-PCR Approaches

(2011) Helen M. Gunter et al.   JOURNAL OF MOLECULAR EVOLUTION

An Improved Likelihood Ratio Test for Detecting Site-Specific Functional Divergence among Clades of Protein-Coding Genes

(2011) Cameron J. Weadick et al.   MOLECULAR BIOLOGY AND EVOLUTION

Change of Positive Selection Pressure on HIV-1 Envelope Gene Inferred by Early and Recent Samples

(2011) Izumi Yoshida et al.   PLoS One

Craniofacial divergence and ongoing adaptation via the hedgehog pathway

(2011) Reade B. Roberts et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Convergent sequence evolution between echolocating bats and dolphins

(2010) Yang Liu et al.   CURRENT BIOLOGY

Large-Scale Analysis of Orthologs and Paralogs under Covarion-Like and Constant-but-Different Models of Amino Acid Evolution

(2010) R. A. Studer et al.   MOLECULAR BIOLOGY AND EVOLUTION

Statistical Properties of the Branch-Site Test of Positive Selection

(2010) Z. Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Intraspecific cone opsin expression variation in the cichlids of Lake Malawi

(2010) ADAM R. SMITH et al.   MOLECULAR ECOLOGY

Origin of a function by tandem gene duplication limits the evolutionary capability of its sister copy

(2010) M. Hasselmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Phototransduction Motifs and Variations

(2009) King-Wai Yau et al.   CELL

Gene duplication and differential gene expression play an important role in the diversification of visual pigments in fish

(2009) C. M. Hofmann et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Cichlid fish visual systems: mechanisms of spectral tuning

(2009) Karen CARLETON   Integrative Zoology

When assumptions on visual system evolution matter: nestling colouration and parental visual performance in birds

(2009) J. P. RENOULT et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Distinguishing Among Evolutionary Models for the Maintenance of Gene Duplicates

(2009) M. W. Hahn   JOURNAL OF HEREDITY

Distinct Evolutionary Patterns Between Two Duplicated Color Vision Genes Within Cyprinid Fishes

(2009) Zhiqiang Li et al.   JOURNAL OF MOLECULAR EVOLUTION

Gene Conversion Among Paralogs Results in Moderate False Detection of Positive Selection Using Likelihood Methods

(2009) Claudio Casola et al.   JOURNAL OF MOLECULAR EVOLUTION

A Ligand Channel through the G Protein Coupled Receptor Opsin

(2009) Peter W. Hildebrand et al.   PLoS One

How confident can we be that orthologs are similar, but paralogs differ?

(2009) Romain A. Studer et al.   TRENDS IN GENETICS

Increased Expression and Protein Divergence in Duplicate Genes Is Associated with Morphological Diversification

(2009) Kousuke Hanada et al.   PLoS Genetics

Investigating Protein-Coding Sequence Evolution with Probabilistic Codon Substitution Models

(2008) M. Anisimova et al.   MOLECULAR BIOLOGY AND EVOLUTION

The interaction of sexually and naturally selected traits in the adaptive radiations of cichlid fishes

(2008) WALTER SALZBURGER   MOLECULAR ECOLOGY

Speciation through sensory drive in cichlid fish

(2008) Ole Seehausen et al.   NATURE

Evolution of vertebrate visual pigments

(2008) James K. Bowmaker   VISION RESEARCH