Detection of germline rearrangements in patients with α- and β-thalassemia using high resolution array CGH

Approximately 80% of alpha-thalassemia mutations are deletions in the alpha-globin cluster on chromosome 16 and about 10% of beta-thalassemia mutations are deletions in the beta-globin gene cluster on chromosome 11. Larger deletions involving the beta-globin gene cluster lead to (delta beta)-, (gamma delta beta)-, (epsilon gamma delta beta)-thalassemia, or hereditary persistence of fetal hemoglobin (HPFH). Array comparative genomic hybridization (CGH) was applied to screen for deletions in the alpha- and beta-globin gene clusters not detected by routine gap-PCR. In total, in 13 patients with hypochromia and inclusion bodies (IBs) the alpha-globin gene cluster was analyzed and in 13 patients with increased fetal hemoglobin levels with or without hypochromia the beta-globin gene cluster was examined. All samples were subsequently investigated by multiplex ligation-dependent probe amplification (MLPA). In 9 out of 13 patients deletions of the alpha-globin gene cluster were identified; 5 of these deletions remove the entire alpha-globin cluster and extend to the telomere. Additional sequencing of the remaining 4 patients revealed polyadenylation mutation in 1 of them. 7 deletions were identified in the beta-globin gene cluster in 13 patients. Additional sequencing of the remaining 6 patients revealed mutations in one of the gamma-globin gene promoters in 3 of them and a KLF1-mutation in 1 of them. Array CGH is a reliable method to screen for deletions in thalassemia and hemoglobinopathy. The method offers the advantage of a high resolution with the possibility to characterize breakpoints on sequence level. (C) 2013 Elsevier Inc. All rights reserved.