Transcriptional comparison of the filamentous fungus Neurospora crassa growing on three major monosaccharides D-glucose, D-xylose and L-arabinose

Cellulase activity mapping of Trichoderma reesei cultivated in sugar mixtures under fed-batch conditions

(2013) Etienne Jourdier et al.   Biotechnology for Biofuels

Using a model filamentous fungus to unravel mechanisms of lignocellulose deconstruction

(2013) Elizabeth A Znameroski et al.   Biotechnology for Biofuels

Xylanase Gene Transcription in Trichoderma reesei Is Triggered by Different Inducers Representing Different Hemicellulosic Pentose Polymers

(2013) Silvia Herold et al.   EUKARYOTIC CELL

A comparative systems analysis of polysaccharide-elicited responses inNeurospora crassareveals carbon source-specific cellular adaptations

(2013) J. Philipp Benz et al.   MOLECULAR MICROBIOLOGY

Competition between pentoses and glucose during uptake and catabolism in recombinant Saccharomyces cerevisiae

(2012) Thorsten Subtil et al.   Biotechnology for Biofuels

Deciphering Transcriptional Regulatory Mechanisms Associated with Hemicellulose Degradation in Neurospora crassa

(2012) Jianping Sun et al.   EUKARYOTIC CELL

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

Induction of lignocellulose-degrading enzymes in Neurospora crassa by cellodextrins

(2012) E. A. Znameroski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

L-Arabitol Is the Actual Inducer of Xylanase Expression in Hypocrea jecorina (Trichoderma reesei)

(2011) Astrid R. Mach-Aigner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Regulation of pentose utilisation by AraR, but not XlnR, differs in Aspergillus nidulans and Aspergillus niger

(2011) Evy Battaglia et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Fungal arabinan and l-arabinose metabolism

(2011) Bernhard Seiboth et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

RNA-Seq of the xylose-fermenting yeast Scheffersomyces stipitis cultivated in glucose or xylose

(2011) Tiezheng Yuan et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Improving L-arabinose utilization of pentose fermenting Saccharomyces cerevisiae cells by heterologous expression of L-arabinose transporting sugar transporters

(2011) Thorsten Subtil et al.   Biotechnology for Biofuels

RNA-seq: technical variability and sampling

(2011) Lauren M McIntyre et al.   BMC GENOMICS

Comparative genomics of xylose-fermenting fungi for enhanced biofuel production

(2011) Dana J. Wohlbach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of regulation of pentose utilisation in Aspergillus niger reveals evolutionary adaptations in Eurotiales

(2011) E. Battaglia et al.   STUDIES IN MYCOLOGY

D-Xylose as a Repressor or Inducer of Xylanase Expression in Hypocrea jecorina (Trichoderma reesei)

(2010) A. R. Mach-Aigner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparison of heterologous xylose transporters in recombinant Saccharomyces cerevisiae

(2010) David Runquist et al.   Biotechnology for Biofuels

Structure and Engineering of l-Arabinitol 4-Dehydrogenase from Neurospora crassa

(2010) Brian Bae et al.   JOURNAL OF MOLECULAR BIOLOGY

Discovery and characterization of novel d-xylose-specific transporters from Neurospora crassa and Pichia stipitis

(2010) Jing Du et al.   Molecular BioSystems

Cellodextrin Transport in Yeast for Improved Biofuel Production

(2010) J. M. Galazka et al.   SCIENCE

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Transcriptomic comparison of Aspergillus niger growing on two different sugars reveals coordinated regulation of the secretory pathway

(2009) Thomas R Jørgensen et al.   BMC GENOMICS

Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa

(2009) Chaoguang Tian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Expression of the Gxf1 transporter from Candida intermedia improves fermentation performance in recombinant xylose-utilizing Saccharomyces cerevisiae

(2008) D. Runquist et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Expression of a heterologous xylose transporter in a Saccharomyces cerevisiae strain engineered to utilize xylose improves aerobic xylose consumption

(2008) Ronald E. Hector et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY