A constraint-based model of Scheffersomyces stipitis for improved ethanol production

Metabolic pathway analysis of Scheffersomyces (Pichia) stipitis: effect of oxygen availability on ethanol synthesis and flux distributions

(2012) Pornkamol Unrean et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Reconstruction and analysis of a genome-scale metabolic model for Scheffersomyces stipitis

(2012) Balaji Balagurunathan et al.   Microbial Cell Factories

Engineering Transaldolase in Pichia stipitis to Improve Bioethanol Production

(2011) Shan-He Chen et al.   ACS Chemical Biology

RNA-Seq of the xylose-fermenting yeast Scheffersomyces stipitis cultivated in glucose or xylose

(2011) Tiezheng Yuan et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Fifteen years of large scale metabolic modeling of yeast: Developments and impacts

(2011) Tobias Österlund et al.   BIOTECHNOLOGY ADVANCES

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

(2011) Jan Schellenberger et al.   Nature Protocols

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

(2011) R. Caspi et al.   NUCLEIC ACIDS RESEARCH

Trends and challenges in the microbial production of lignocellulosic bioalcohol fuels

(2010) Christian Weber et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Use of genome-scale metabolic models for understanding microbial physiology

(2010) Liming Liu et al.   FEBS LETTERS

Genome-scale metabolic reconstruction and in silico analysis of methylotrophic yeast Pichia pastoris for strain improvement

(2010) Bevan KS Chung et al.   Microbial Cell Factories

Discovery and characterization of novel d-xylose-specific transporters from Neurospora crassa and Pichia stipitis

(2010) Jing Du et al.   Molecular BioSystems

What is flux balance analysis?

(2010) Jeffrey D Orth et al.   NATURE BIOTECHNOLOGY

BRENDA, the enzyme information system in 2011

(2010) M. Scheer et al.   NUCLEIC ACIDS RESEARCH

Ethanol production from xylose in engineered Saccharomyces cerevisiae strains: current state and perspectives

(2009) Akinori Matsushika et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Connecting extracellular metabolomic measurements to intracellular flux states in yeast

(2009) Monica L Mo et al.   BMC Systems Biology

Pichia stipitisgenomics, transcriptomics, and gene clusters

(2009) Thomas W. Jeffries et al.   FEMS YEAST RESEARCH

Engineering for biofuels: exploiting innate microbial capacity or importing biosynthetic potential?

(2009) Hal Alper et al.   NATURE REVIEWS MICROBIOLOGY

KEGG for representation and analysis of molecular networks involving diseases and drugs

(2009) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Cellulosic ethanol production using the naturally occurring xylose-fermenting yeast, Pichia stipitis

(2008) Frank K. Agbogbo et al.   BIOTECHNOLOGY LETTERS

Metabolic fate of l-lactaldehyde derived from an alternative l-rhamnose pathway

(2008) Seiya Watanabe et al.   FEBS Journal

The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli

(2008) Adam M Feist et al.   NATURE BIOTECHNOLOGY

The Transporter Classification Database: recent advances

(2008) M. H. Saier et al.   NUCLEIC ACIDS RESEARCH