Comparison of genome-wide selection strategies to identify furfural tolerance genes in Escherichia coli

Genome-Wide Mapping of Furfural Tolerance Genes in Escherichia coli

(2014) Tirzah Y. Glebes et al.   PLoS One

Roles of the Yap1 Transcription Factor and Antioxidants in Saccharomyces cerevisiae's Tolerance to Furfural and 5-Hydroxymethylfurfural, Which Function as Thiol-Reactive Electrophiles Generating Oxidative Stress

(2013) D. Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Improving Escherichia coli FucO for Furfural Tolerance by Saturation Mutagenesis of Individual Amino Acid Positions

(2013) Huabao Zheng et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Transcriptional analysis of Clostridium beijerinckii NCIMB 8052 to elucidate role of furfural stress during acetone butanol ethanol fermentation

(2013) Yan Zhang et al.   Biotechnology for Biofuels

Inhibition of growth of Zymomonas mobilis by model compounds found in lignocellulosic hydrolysates

(2013) Mary Ann Franden et al.   Biotechnology for Biofuels

Engineering improved ethanol production in Escherichia coli with a genome-wide approach

(2013) Lauren B.A. Woodruff et al.   METABOLIC ENGINEERING

Engineering glutathione biosynthesis of Saccharomyces cerevisiae increases robustness to inhibitors in pretreated lignocellulosic materials

(2013) Magnus Ask et al.   Microbial Cell Factories

Dissecting a complex chemical stress: chemogenomic profiling of plant hydrolysates

(2013) J. M. Skerker et al.   Molecular Systems Biology

RNA-guided editing of bacterial genomes using CRISPR-Cas systems

(2013) Wenyan Jiang et al.   NATURE BIOTECHNOLOGY

Genome dynamics during experimental evolution

(2013) Jeffrey E. Barrick et al.   NATURE REVIEWS GENETICS

Genome-Wide Identification of Genes Conferring Energy Related Resistance to a Synthetic Antimicrobial Peptide (Bac8c)

(2013) Eileen C. Spindler et al.   PLoS One

A Comparative Analysis of Industrial Escherichia coli K–12 and B Strains in High-Glucose Batch Cultivations on Process-, Transcriptome- and Proteome Level

(2013) Karoline Marisch et al.   PLoS One

Engineering furfural tolerance in Escherichia coli improves the fermentation of lignocellulosic sugars into renewable chemicals

(2013) X. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Increased Furan Tolerance in Escherichia coli Due to a CrypticucpAGene

(2012) Xuan Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Increase in Furfural Tolerance in Ethanologenic Escherichia coli LY180 by Plasmid-Based Expression ofthyA

(2012) Huabao Zheng et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Global regulator engineering significantly improvedEscherichia colitolerances toward inhibitors of lignocellulosic hydrolysates

(2012) Jianqing Wang et al.   BIOTECHNOLOGY AND BIOENGINEERING

Genome-scale identification and characterization of ethanol tolerance genes in Escherichia coli

(2012) Lauren B.A. Woodruff et al.   METABOLIC ENGINEERING

Genome-scale promoter engineering by coselection MAGE

(2012) Harris H Wang et al.   NATURE METHODS

Strategy for directing combinatorial genome engineering in Escherichia coli

(2012) N. R. Sandoval et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Increased Furfural Tolerance Due to Overexpression of NADH-Dependent Oxidoreductase FucO in Escherichia coli Strains Engineered for the Production of Ethanol and Lactate

(2011) X. Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Novel reference genes for quantifying transcriptional responses of Escherichia coli to protein overexpression by quantitative PCR

(2011) Kang Zhou et al.   BMC MOLECULAR BIOLOGY

Engineering microbial biofuel tolerance and export using efflux pumps

(2011) M. J. Dunlop et al.   Molecular Systems Biology

Furfural induces reactive oxygen species accumulation and cellular damage in Saccharomyces cerevisiae

(2010) Sandra A Allen et al.   Biotechnology for Biofuels

Cloning and characterization of Escherichia coli DUF299: a bifunctional ADP-dependent kinase - Pi-dependent pyrophosphorylase from bacteria

(2010) Jim N Burnell   BMC BIOCHEMISTRY

YqhC regulates transcription of the adjacent Escherichia coli genes yqhD and dkgA that are involved in furfural tolerance

(2010) Peter C. Turner et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Rapid dissection of a complex phenotype through genomic-scale mapping of fitness altering genes

(2010) T.E. Warnecke et al.   METABOLIC ENGINEERING

Elucidating acetate tolerance in E. coli using a genome-wide approach

(2010) Nicholas R. Sandoval et al.   METABOLIC ENGINEERING

Regulatory and metabolic rewiring during laboratory evolution of ethanol tolerance in E. coli

(2010) Hani Goodarzi et al.   Molecular Systems Biology

Rapid profiling of a microbial genome using mixtures of barcoded oligonucleotides

(2010) Joseph R Warner et al.   NATURE BIOTECHNOLOGY

Silencing of NADPH-Dependent Oxidoreductase Genes (yqhD and dkgA) in Furfural-Resistant Ethanologenic Escherichia coli

(2009) E. N. Miller et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Furfural Inhibits Growth by Limiting Sulfur Assimilation in Ethanologenic Escherichia coli Strain LY180

(2009) E. N. Miller et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Cellulosic hydrolysate toxicity and tolerance mechanisms in Escherichia coli

(2009) Tirzah Y Mills et al.   Biotechnology for Biofuels

Genes restoring redox balance in fermentation-deficient E. coli NZN111

(2009) Amarjeet Singh et al.   METABOLIC ENGINEERING

Programming cells by multiplex genome engineering and accelerated evolution

(2009) Harris H. Wang et al.   NATURE

Automated design of synthetic ribosome binding sites to control protein expression

(2009) Howard M Salis et al.   NATURE BIOTECHNOLOGY

Inverse regulatory coordination of motility and curli-mediated adhesion in Escherichia coli

(2008) C. Pesavento et al.   GENES & DEVELOPMENT

Parallel mapping of genotypes to phenotypes contributing to overall biological fitness

(2008) S. Gall et al.   METABOLIC ENGINEERING

A genomics approach to improve the analysis and design of strain selections

(2008) T.E. Warnecke et al.   METABOLIC ENGINEERING

GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis

(2008) Qi Zheng et al.   NUCLEIC ACIDS RESEARCH

Genome-scale analysis of anti-metabolite directed strain engineering

(2007) Jeanne Bonomo et al.   METABOLIC ENGINEERING