Genome scale metabolic modeling of the riboflavin overproducer Ashbya gossypii

Toward systems metabolic engineering ofAspergillusandPichiaspecies for the production of chemicals and biofuels

(2013) Luis Caspeta et al.   Biotechnology Journal

Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling

(2013) Tobias Österlund et al.   BMC Systems Biology

Genome-scale modeling enables metabolic engineering of Saccharomyces cerevisiae for succinic acid production

(2013) Rasmus Agren et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods

(2013) Leif Väremo et al.   NUCLEIC ACIDS RESEARCH

Industrial Systems Biology of Saccharomyces cerevisiae Enables Novel Succinic Acid Cell Factory

(2013) José Manuel Otero et al.   PLoS One

Biotechnological production of feed nucleotides by microbial strain improvement

(2013) Rodrigo Ledesma-Amaro et al.   PROCESS BIOCHEMISTRY

The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum

(2013) Rasmus Agren et al.   PLoS Computational Biology

Random and direct mutagenesis to enhance protein secretion inAshbya gossypii

(2013) Orquídea Ribeiro et al.   Bioengineered

Evolutionary engineering of Saccharomyces cerevisiae for efficient aerobic xylose consumption

(2012) Gionata Scalcinati et al.   FEMS YEAST RESEARCH

The improvement of riboflavin production in Ashbya gossypii via disparity mutagenesis and DNA microarray analysis

(2011) Enoch Y. Park et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Riboflavin production by Ashbya gossypii

(2011) Tatsuya Kato et al.   BIOTECHNOLOGY LETTERS

Recent advances in reconstruction and applications of genome-scale metabolic models

(2011) Tae Yong Kim et al.   CURRENT OPINION IN BIOTECHNOLOGY

Characterization of α-factor pheromone and pheromone receptor genes of Ashbya gossypii

(2011) Jürgen Wendland et al.   FEMS YEAST RESEARCH

Evolution of multinucleated Ashbya gossypii hyphae from a budding yeast-like ancestor

(2011) Hans-Peter Schmitz et al.   Fungal Biology

Nutritional requirements and strain heterogeneity inAshbya gossypii

(2011) Orquídea Ribeiro et al.   JOURNAL OF BASIC MICROBIOLOGY

Regulation of exit from mitosis in multinucleate Ashbya gossypii cells relies on a minimal network of genes

(2011) Mark R. Finlayson et al.   MOLECULAR BIOLOGY OF THE CELL

Saccharomyces Genome Database: the genomics resource of budding yeast

(2011) J. M. Cherry et al.   NUCLEIC ACIDS RESEARCH

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

(2011) R. Caspi et al.   NUCLEIC ACIDS RESEARCH

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Expression of Trichoderma reesei cellulases CBHI and EGI in Ashbya gossypii

(2010) Orquídea Ribeiro et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

BioMet Toolbox: genome-wide analysis of metabolism

(2010) M. Cvijovic et al.   NUCLEIC ACIDS RESEARCH

The Genetic Landscape of a Cell

(2010) M. Costanzo et al.   SCIENCE

Sampling the Solution Space in Genome-Scale Metabolic Networks Reveals Transcriptional Regulation in Key Enzymes

(2010) Sergio Bordel et al.   PLoS Computational Biology

Importance of malate synthase in the glyoxylate cycle of Ashbya gossypii for the efficient production of riboflavin

(2009) Takashi Sugimoto et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Constraints-based genome-scale metabolic simulation for systems metabolic engineering

(2009) Jong Myoung Park et al.   BIOTECHNOLOGY ADVANCES

Transcriptome analysis guided metabolic engineering of Bacillus subtilis for riboflavin production

(2009) Shuobo Shi et al.   METABOLIC ENGINEERING

Phosphoribosyl pyrophosphate synthetase activity affects growth and riboflavin production in Ashbya gossypii

(2008) Alberto Jiménez et al.   BMC BIOTECHNOLOGY

Improved annotation through genome-scale metabolic modeling of Aspergillus oryzae

(2008) Wanwipa Vongsangnak et al.   BMC GENOMICS