Enzyme localization, crowding, and buffers collectively modulate diffusion-influenced signal transduction: Insights from continuum diffusion modeling

Electrostatic Channeling in P. falciparum DHFR-TS: Brownian Dynamics and Smoluchowski Modeling

(2014) Vincent T. Metzger et al.   BIOPHYSICAL JOURNAL

Computational modeling of subcellular transport and signaling

(2014) Johan Hake et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Predicting the influence of long-range molecular interactions on macroscopic-scale diffusion by homogenization of the Smoluchowski equation

(2014) P. M. Kekenes-Huskey et al.   JOURNAL OF CHEMICAL PHYSICS

A model study of sequential enzyme reactions and electrostatic channeling

(2014) Changsun Eun et al.   JOURNAL OF CHEMICAL PHYSICS

A modified local control model for Ca2+ transients in cardiomyocytes: Junctional flux is accompanied by release from adjacent non-junctional RyRs

(2014) Natalia S. Torres et al.   JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY

Role of Differential Transport in an Oscillatory Enzyme Reaction

(2014) Tamás Bánsági et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Nonmonotonic Diffusion of Particles Among Larger Attractive Crowding Spheres

(2014) Gregory Garbès Putzel et al.   PHYSICAL REVIEW LETTERS

Molecular and Subcellular-Scale Modeling of Nucleotide Diffusion in the Cardiac Myofilament Lattice

(2013) Peter M. Kekenes-Huskey et al.   BIOPHYSICAL JOURNAL

Cardiac Myocyte Z-Line Calmodulin Is Mainly RyR2-Bound, and Reduction Is Arrhythmogenic and Occurs in Heart Failure

(2013) Yi Yang et al.   CIRCULATION RESEARCH

Oscillatory enzyme reactions and Michaelis-Menten kinetics

(2013) Albert Goldbeter   FEBS LETTERS

Influence of neighboring reactive particles on diffusion-limited reactions

(2013) Changsun Eun et al.   JOURNAL OF CHEMICAL PHYSICS

Cardiac sodium transport and excitation–contraction coupling

(2013) J.M. Aronsen et al.   JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY

Slow Ca2+ sparks de-synchronize Ca2+ release in failing cardiomyocytes: Evidence for altered configuration of Ca2+ release units?

(2013) William E. Louch et al.   JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY

Analysis of Molecular Movement Reveals Latticelike Obstructions to Diffusion in Heart Muscle Cells

(2012) Ardo Illaste et al.   BIOPHYSICAL JOURNAL

Ionic transfer in charged porous media. Periodic homogenization and parametric study on 2D microstructures

(2012) K. Bourbatache et al.   INTERNATIONAL JOURNAL OF HEAT AND MASS TRANSFER

Modelling cardiac calcium sparks in a three-dimensional reconstruction of a calcium release unit

(2012) Johan Hake et al.   JOURNAL OF PHYSIOLOGY-LONDON

First error bounds for the porous media approximation of the Poisson-Nernst-Planck equations

(2012) M. Schmuck   ZAMM-Zeitschrift fur Angewandte Mathematik und Mechanik

Modeling Effects of L-Type Ca2+ Current and Na+-Ca2+ Exchanger on Ca2+ Trigger Flux in Rabbit Myocytes with Realistic T-Tubule Geometries

(2012) Peter M. Kekenes-Huskey et al.   Frontiers in Physiology

Modeling the Cell Cycle: Why Do Certain Circuits Oscillate?

(2011) James E. Ferrell et al.   CELL

Compartmentation of membrane processes and nucleotide dynamics in diffusion-restricted cardiac cell microenvironment

(2011) Alexey E. Alekseev et al.   JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY

Models of macromolecular crowding effects and the need for quantitative comparisons with experiment

(2010) Adrian H Elcock   CURRENT OPINION IN STRUCTURAL BIOLOGY

There Goes the Neighborhood: Pathological Alterations in T-Tubule Morphology and Consequences for Cardiomyocyte Handling

(2010) William E. Louch et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

Analysis of biochemical reactions models with delays

(2010) Marek Bodnar et al.   JOURNAL OF MATHEMATICAL ANALYSIS AND APPLICATIONS

Diffusion, Crowding & Protein Stability in a Dynamic Molecular Model of the Bacterial Cytoplasm

(2010) Sean R. McGuffee et al.   PLoS Computational Biology

A Mathematical Analysis of Obstructed Diffusion within Skeletal Muscle

(2009) P.R. Shorten et al.   BIOPHYSICAL JOURNAL

Na+transport in cardiac myocytes; Implications for excitation-contraction coupling

(2009) Donald M. Bers et al.   IUBMB LIFE

A-kinase anchoring proteins: From protein complexes to physiology and disease

(2009) Graeme K. Carnegie et al.   IUBMB LIFE

Anisotropic diffusion of fluorescently labeled ATP in rat cardiomyocytes determined by raster image correlation spectroscopy

(2008) Marko Vendelin et al.   AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY

Macromolecular Crowding and Confinement: Biochemical, Biophysical, and Potential Physiological Consequences

(2008) Huan-Xiang Zhou et al.   Annual Review of Biophysics

Crowding Effects on Diffusion in Solutions and Cells

(2008) James A. Dix et al.   Annual Review of Biophysics

Diffusional Channeling in the Sulfate-Activating Complex: Combined Continuum Modeling and Coarse-Grained Brownian Dynamics Studies

(2008) Yuhui Cheng et al.   BIOPHYSICAL JOURNAL

Ion Transport in Sulfonated Nanoporous Colloidal Films

(2008) Joanna J. Smith et al.   LANGMUIR

Stability and Time-Delay Modeling of Negative Feedback Loops

(2008) J. Wagner et al.   PROCEEDINGS OF THE IEEE