Article
Biochemistry & Molecular Biology
Mohtadin Hashemi, Siddhartha Banerjee, Yuri L. Lyubchenko
Summary: The effects of membranes on the early-stage aggregation of amyloid beta (A beta) have been studied, showing that direct A beta-membrane interactions dramatically enhance the aggregation process. Cholesterol in membranes significantly enhances the aggregation kinetics and accelerates the formation and dissociation of aggregates. Cholesterol binds A beta monomers and changes their conformation.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Biochemistry & Molecular Biology
Siddhartha Banerjee, Mohtadin Hashemi, Karen Zagorski, Yuri L. Lyubchenko
Summary: The presence of cholesterol in lipid bilayers significantly enhances the aggregation process of Aβ42 at low concentrations, indicating that the lipid composition plays a crucial role in controlling the self-assembly of Aβ oligomers in cellular membranes.
ACS CHEMICAL NEUROSCIENCE
(2021)
Article
Chemistry, Multidisciplinary
Amandeep Kaur, Liam D. Adair, Sarah R. Ball, Elizabeth J. New, Margaret Sunde
Summary: In this study, the researchers developed a fluorescent amyloid sensor called AmyBlink-1 and used it for super-resolution imaging of amyloid structures. They were able to achieve nanoscale imaging of different types of amyloid fibrils and quantify their morphological features.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
(2022)
Article
Biochemistry & Molecular Biology
Qize Xuan, Jiaxin He, Wenxue Zhang, Wei Zhang, Qi Zhang, Yao Zhou, Anqi Wei, Hao Wang, Hui Li, Chao Chen, Ping Wang
Summary: This study successfully prepared three different morphological and structural phenol-soluble modulin alpha 3 (PSM alpha 3) assemblies using the strategy of salt-inducing assembly polymorphism. It was found that amyloid fibrillation was essential for enhancing the cytotoxicity of PSM alpha 3, and the size and structure of PSM alpha 3 fibrils played a crucial role in cytotoxicity. The cytotoxicity was achieved through a membrane-disrupting mechanism, with different fibril types causing membrane thinning or perforation.
Review
Biochemistry & Molecular Biology
Katrin Ha Phuong Vu, Gerhard Heinrich Blankenburg, Leonardo Lesser-Rojas, Chia-Fu Chou
Summary: Amyloid oligomeric species play a significant role in neurodegenerative and metabolic diseases, but studying their structure is challenging due to their low abundance and heterogeneity. Single-molecule techniques have the potential to overcome these challenges.
Review
Biochemistry & Molecular Biology
Jie Yang, Sarah Perrett, Si Wu
Summary: The misfolding and aggregation of polypeptide chains into amyloid fibrils are associated with neurodegenerative diseases. The oligomeric intermediates in early amyloid formation, rather than mature fibrils, are cytotoxic and potentially therapeutic targets. Single molecule fluorescence techniques have been developed to investigate amyloid oligomers and aggregation mechanisms.
Article
Engineering, Chemical
Yanan Huang, Peng Yang, Facui Yang, Chunyu Chang
Summary: In this study, self-supported nanocomposite membranes with multifunctional separation performances were successfully fabricated by integrating amyloid-like oligomers with nanocelluloses to remove various pollutants from water resources. Benefitting from multiple functional groups, the membranes showed excellent removal efficiency and sustainability.
JOURNAL OF MEMBRANE SCIENCE
(2021)
Article
Biochemistry & Molecular Biology
Adewale Adegbuyiro, Faezeh Sedighi, Pranav Jain, Mark Pinti, Chathuranga Siriwardhana, John M. Hollander, Justin Legleiter
Summary: The study found that mitochondrial membranes play a significant role in influencing the aggregation of the huntingtin protein in Huntington's disease, with the inner mitochondrial membrane having a greater impact. Cardiolipin (CL) was identified as a key player in mhtt aggregation, with different molar ratios affecting fibrillization processes.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2021)
Article
Chemistry, Multidisciplinary
Qiong-Qiong Yao, Jitao Wen, Sarah Perrett, Si Wu
Summary: This study reveals the mechanisms by which lipid membranes influence the amyloid formation of Tau protein. It shows that lipid membranes can induce conformational changes in Tau and either accelerate or inhibit its fibrillation process depending on the concentration of the lipid membrane.
Article
Biochemistry & Molecular Biology
Lei Gu, Zhefeng Guo
Summary: Formation of amyloid oligomers and fibrils, underlying neurodegenerative diseases like Alzheimer's, involves interactions with cellular membranes. The conversion of Aβ42 globulomers to fibrils in the presence of DOPC liposomes suggests a dynamic nature of interactions between Aβ oligomers and membranes. Lipid membranes can reduce membrane-disrupting activities caused by Aβ oligomers by converting them to fibrils.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2021)
Article
Chemistry, Analytical
Jiseong Park, Yongdeok Ahn, Wonhee John Lee, Siwoo Jin, Sejoo Jeong, Jaeyong Kim, Young-Sam Lee, Jong-Chan Lee, Daeha Seo
Summary: Researchers have developed a method called lipid-MAP that uses nanoparticles, single-molecule localization microscopy, and a hidden Markov model algorithm to analyze the phase heterogeneity of lipid membranes. They were able to detect and characterize small and transient lipid domains in live cells.
ANALYTICAL CHEMISTRY
(2023)
Article
Chemistry, Multidisciplinary
Zhengxin Yu, Weijie Guo, Shrey Patel, Hong-Jun Cho, Liang Sun, Liviu M. Mirica
Summary: This study developed twelve small molecule compounds with different amphiphilic properties, which showed high binding affinity to the hallmark Aβ plaques and oligomers of Alzheimer's disease. These compounds also exhibited the ability to alleviate Cu2+-Aβ induced toxicity and disrupt the interactions between Aβ oligomers and cell membranes.
Article
Physics, Fluids & Plasmas
Everest Law, Yiwei Li, Osman Kahraman, Christoph A. Haselwandter
Summary: Experimental and theoretical studies have shown that synaptic receptor and scaffold molecules spontaneously assemble into membrane protein domains that facilitate signal transmission across chemical synapses. Using kinetic Monte Carlo simulations, it has been demonstrated that the reaction-diffusion dynamics of receptor and scaffold molecules can lead to the self-assembly of domains similar to those observed in nerve cells. The intrinsic noise associated with these processes accelerates the self-assembly of receptor-scaffold domains and contributes to their robustness.
Article
Biochemistry & Molecular Biology
Atsushi Michael Kimura, Mayumi Tsuji, Taro Yasumoto, Yukiko Mori, Tatsunori Oguchi, Yuya Tsuji, Masakazu Umino, Asami Umino, Toru Nishikawa, Shiro Nakamura, Tomio Inoue, Yuji Kiuchi, Masahito Yamada, David B. Teplow, Kenjiro Ono
Summary: Accumulation of amyloid beta-protein is a primary mechanism leading to neuronal death in Alzheimer's disease, with protofibrils being a key target for disease-modifying therapy. Previous studies have shown that phenolic compounds like myricetin can inhibit aggregations of beta-amyloid and alpha-synuclein, providing protective effects against AD and Parkinson's disease. This study demonstrates that myricetin can protect against HMW-A beta o-induced neurotoxicity through multiple antioxidant functions, suggesting its potential as a disease-modifying agent for AD.
FREE RADICAL BIOLOGY AND MEDICINE
(2021)
Article
Chemistry, Multidisciplinary
Torsten John, Stefania Piantavigna, Tiara J. A. Dealey, Bernd Abel, Herre Jelger Risselada, Lisandra L. L. Martin
Summary: This study investigates the impact of membrane models on peptide self-assembly and proposes a model for predicting the effects of cellular changes on peptide assembly. The presence of oxidative lipids has similar effects on peptide self-assembly as bacterial membrane mimetics. Peptides with different properties exhibit different responses to lipid environments, with electrostatic interactions playing a primary role.
Article
Pharmacology & Pharmacy
Zunaira Shoaib, Timothy M. Fan, Joseph M. K. Irudayaraj
Summary: Osteosarcoma, a common primary bone tumor, is influenced by mechanobiology in its pathogenesis. Mechanobiology-driven therapies can curb tumor progression by altering the physical microenvironment or inhibiting proteins associated with metastasis.
BRITISH JOURNAL OF PHARMACOLOGY
(2022)
Article
Chemistry, Multidisciplinary
Wenjie Liu, Abinash Padhi, Xiaohui Zhang, Jairaj Narendran, Mark A. Anastasio, Amrinder S. Nain, Joseph Irudayaraj
Summary: This study elucidates the spatiotemporal organization of heterochromatin in the elongated nuclei of cells on aligned nanofibers. The findings suggest that the anisotropy of nuclei is sufficient to drive heterochromatin alterations, and reveal an unconventional H3K9me3 heterochromatin distribution.
Article
Chemistry, Analytical
Vicky Vishvakarma, Oskar Engberg, Daniel Huster, Sudipta Maiti
Summary: The study demonstrates that nanosecond fluorescence correlation spectroscopy can directly measure the viscosity of highly curved membranes with extraordinary sensitivity. The increase in cholesterol mole fraction leads to a significant change in membrane viscosity, indicating a remarkable sensitivity of viscosity to cholesterol content in neurotransmitter vesicle mimics.
METHODS AND APPLICATIONS IN FLUORESCENCE
(2022)
Article
Engineering, Biomedical
Yoon Jeong, Joseph Irudayaraj
Summary: In order to sequester prokaryotic cells in a biofilm-like niche, it is crucial to create a microenvironment that reflects the heterogeneous nature of biological systems. This study presents an artificial long-term confinement model using natural alginate hydrogels that can support the growth and survival of organisms for over 10 days. The confinement platform allows for the encapsulation of bacterial cells in both the core and shell layers, with tunable thickness and number of shell layers.
ACTA BIOMATERIALIA
(2023)
Article
Biophysics
Yoon Jeong, Wentao Kong, Ting Lu, Joseph Irudayaraj
Summary: In this study, a natural soft hydrogel bioactuator based on alginate core-shell structures was developed to enable 3D microbial colonization at high cell density. Compared to conventional techniques, this system showed a significant increase in cellular biomass, enzymatic activity, and bioluminescence signal, while providing sustained support for bacterial growth within confined space.
BIOSENSORS & BIOELECTRONICS
(2023)
Article
Food Science & Technology
Zhiyang (Stan) Tu, Joseph Irudayaraj, Youngsoo Lee
Summary: This study aimed to enhance the understanding of applying NIR spectroscopy in spray-dried samples by comparing two sample preparation strategies and two spectrometers. The results showed that the sample preparation strategies had little impact on NIR calibration model development. Although the benchtop NIR spectrometer outperformed the portable NIR spectrometer, the portable NIR spectrometer still demonstrated reliable performance for moisture analysis.
Review
Environmental Sciences
Xing Zhang, Jodi A. Flaws, Michael J. Spinella, Joseph Irudayaraj
Summary: Endocrine disrupting chemicals (EDCs) are exogenous substances that can alter the endocrine function of an organism, leading to adverse effects on growth, development, metabolism, and reproductive function. Studies have shown that EDCs can cause proteinuria, affect glomeruli and renal tubules, and even lead to diabetes and renal fibrosis in both animals and humans. This review discusses the renal accumulation of specific EDCs, such as dioxins, per- and polyfluoroalkyl substances (PFAS), bisphenol A (BPA), and phthalates, and explores how exposure to these EDCs can result in renal lesions and diseases, including cancer. The regulation of target genes and activation of related pathways by typical EDCs are also summarized.
Article
Chemistry, Physical
Ankur Gupta, Pawel Krupa, Oskar Engberg, Magdalena Krupa, Ankur Chaudhary, Mai Suan Li, Daniel Huster, Sudipta Maiti
Summary: Nature confines high concentrations of amphiphilic neurotransmitters like serotonin in synaptic vesicles, which affect the mechanical properties of lipid bilayer membranes. However, a mixture of specific lipids in natural vesicles, mimicking their ratios, is minimally perturbed by serotonin, suggesting an emergent mechanical property of these lipids. The role of cholesterol in dictating the mechanical perturbations is minor, indicating that nature utilizes a specific lipid mixture's vulnerability to serotonin to appropriately respond to physiological levels.
JOURNAL OF PHYSICAL CHEMISTRY B
(2023)
Review
Medicine, Research & Experimental
Xiaoxue Han, Leah Suyeon Ju, Joseph Irudayaraj
Summary: Oxygen is crucial in regulating various processes in wound healing. However, hypoxia commonly found in wounds can hinder normal healing. To enhance wound healing, oxygenation strategies such as incorporating oxygen delivery materials are effective. This review summarizes the stages of wound healing, the role of hypoxia, and current strategies for incorporating oxygen into wound dressings. The efficacy, mechanisms, and potential benefits and drawbacks of various oxygenation materials are discussed.
MOLECULAR PHARMACEUTICS
(2023)
Article
Environmental Sciences
Faizan Rashid, Veronika Dubinkina, Saeed Ahmad, Sergei Maslov, Joseph Maria Kumar Irudayaraj
Summary: Exposure to PFOS and GenX has different effects on the microbiome of the small intestine and colon, as well as on liver metabolism. High doses of GenX increase the abundance of certain bacteria, while PFOS generally alters the abundance of other bacteria. These treatments are associated with alterations in important microbial metabolic pathways. Additionally, PFOS and GenX exposure can cause metabolic disorders in the liver.
Article
Engineering, Environmental
Yoon Jeong, Khushali Vyas, Joseph Irudayaraj
Summary: This study investigates the toxicity of PFAS on bacteria in a biofilm-like niche provided by hydrogel-based core-shell beads. The findings show that Escherichia coli MG1655 strain confined in hydrogel beads exhibit altered physiological characteristics compared to their susceptible counterpart cultivated under planktonic conditions. The study suggests that soft-hydrogel engineering platforms may protect microorganisms from environmental contaminants.
JOURNAL OF HAZARDOUS MATERIALS
(2023)
Article
Chemistry, Physical
Simran Arora, Debsankar Saha Roy, Sudipta Maiti, Sri Rama Koti Ainavarapu
Summary: This study reveals the important role of folded protein SUMO in liquid-liquid phase separation (LLPS) in cells. The researchers show that SUMO1 can rapidly undergo phase separation into liquid-like condensates under physiological conditions. Moreover, the structured part of SUMO1 is found to play a crucial role in the phase transition process.
JOURNAL OF PHYSICAL CHEMISTRY LETTERS
(2023)
Article
Nanoscience & Nanotechnology
Wen Ren, Victoria Messerschmidt, Michael Tsipursky, Joseph Irudayaraj
Summary: In this study, an oxygen nanobubbles-embedded hydrogel (ONB-G) with carbopol was proposed for oxygenation of wounds to accelerate wound healing. ONB-G, prepared by integrating carbopol, hydrogel, and dextran-based oxygen nanobubbles (ONBs), can hold and release oxygen to promote wound healing. Experimental results showed that ONB-G could encapsulate oxygen for up to 34 days and maintain high oxygen levels for up to 4 weeks. HDFa cell-based studies demonstrated the potential of ONB-G in enhancing cell viability, proliferation, and wound closure. Histological evaluation using a pig model also indicated improved healing with ONB-G treatment compared to control groups. Overall, dextran-shell ONBs embedded in a gel exhibit promising potential in accelerating wound healing.
ACS APPLIED NANO MATERIALS
(2023)
Article
Chemistry, Multidisciplinary
Yoon Jeong, Joseph Irudayaraj
Summary: This study demonstrates the design and fabrication of finely tuned alginate core-shell capsules with controllable core and shell thickness at the micron scale. These capsules were successfully used to encapsulate bacteria while maintaining their morphology and mechanical stability.
CHEMICAL COMMUNICATIONS
(2022)
Article
Genetics & Heredity
Yi Wen, Faizan Rashid, Zeeshan Fazal, Ratnakar Singh, Michael J. Spinella, Joseph Irudayaraj
Summary: The study showed that PFOS accumulated in mouse kidneys in a dose-dependent manner, leading to significant increase in kidney injury markers, affecting transcription factors and epigenetic mechanisms. The decrease in global DNA methylation levels suggests potential implications of PFOS on kidney fibrosis and carcinogenesis.
ENVIRONMENTAL EPIGENETICS
(2022)