Calibrated chronograms, fossils, outgroup relationships, and root priors: re-examining the historical biogeography of Geraniales

Phylogenetic influences on leaf trait integration in Pelargonium (Geraniaceae): Convergence, divergence, and historical adaptation to a rapidly changing climate

(2013) Cynthia S. Jones et al.   AMERICAN JOURNAL OF BOTANY

Land plant evolutionary timeline: Gene effects are secondary to fossil constraints in relaxed clock estimation of age and substitution rates

(2013) Susana Magallón et al.   AMERICAN JOURNAL OF BOTANY

Adaptive radiation, correlated and contingent evolution, and net species diversification in Bromeliaceae

(2013) Thomas J. Givnish et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Exploring the impact of fossil constraints on the divergence time estimates of derived liverworts

(2013) Kathrin Feldberg et al.   PLANT SYSTEMATICS AND EVOLUTION

Inferring the biogeographic origins of inter-continental disjunct endemics using a Bayes-DIVA approach

(2013) AJ HARRIS et al.   Journal of Systematics and Evolution

Lost Branches on the Tree of Life

(2013) Bryan T. Drew et al.   PLOS BIOLOGY

First Miocene fossils of Vivianiaceae shed new light on phylogeny, divergence times, and historical biogeography of Geraniales

(2012) LUIS PALAZZESI et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

The South American radiation ofLepechinia(Lamiaceae): phylogenetics, divergence times and evolution of dioecy

(2012) Bryan T. Drew et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Historical biogeography and life-history evolution of AndeanPuya(Bromeliaceae)

(2012) Rachel S. Jabaily et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Testing geological models of evolution of the Isthmus of Panama in a phylogenetic framework

(2012) Christine D. Bacon et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Dating clades with fossils and molecules: the case of Annonaceae

(2012) MICHAEL D. PIRIE et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

The Geological Society of America Geologic Time Scale

(2012) J. D. Walker et al.   GEOLOGICAL SOCIETY OF AMERICA BULLETIN

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular phylogenetics: principles and practice

(2012) Ziheng Yang et al.   NATURE REVIEWS GENETICS

Past Climate Change and Plant Evolution in Western North America: A Case Study in Rosaceae

(2012) Mats Töpel et al.   PLoS One

Systematics Agenda 2020: The Mission Evolves

(2012) Marymegan Daly et al.   SYSTEMATIC BIOLOGY

Multiple Continental Radiations and Correlates of Diversification in Lupinus (Leguminosae): Testing for Key Innovation with Incomplete Taxon Sampling

(2012) Christopher S. Drummond et al.   SYSTEMATIC BIOLOGY

Phylogenetics of early branching eudicots: Comparing phylogenetic signal across plastid introns, spacers, and genes

(2012) Anna-Magdalena BARNISKE et al.   Journal of Systematics and Evolution

Angiosperm phylogeny: 17 genes, 640 taxa

(2011) Douglas E. Soltis et al.   AMERICAN JOURNAL OF BOTANY

Phylogeny, adaptive radiation, and historical biogeography in Bromeliaceae: Insights from an eight-locus plastid phylogeny

(2011) Thomas J. Givnish et al.   AMERICAN JOURNAL OF BOTANY

Synthesizing and databasing fossil calibrations: divergence dating and beyond

(2011) D. T. Ksepka et al.   Biology Letters

Exploring uncertainty in the calibration of the molecular clock

(2011) R. C. M. Warnock et al.   Biology Letters

Relaxed Clocks and Inferences of Heterogeneous Patterns of Nucleotide Substitution and Divergence Time Estimates across Whales and Dolphins (Mammalia: Cetacea)

(2011) A. Dornburg et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Dirichlet Process Prior for Estimating Lineage-Specific Substitution Rates

(2011) T. A. Heath et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inconsistencies in Estimating the Age of HIV-1 Subtypes Due to Heterotachy

(2011) J. O. Wertheim et al.   MOLECULAR BIOLOGY AND EVOLUTION

Exploring Patterns and Extent of Bias in Estimating Divergence Time from Mitochondrial DNA Sequence Data in a Particular Lineage: A Case Study of Salamanders (Order Caudata)

(2011) Y. Zheng et al.   MOLECULAR BIOLOGY AND EVOLUTION

Diversification in Adelomyia hummingbirds follows Andean uplift

(2011) JAIME A. CHAVES et al.   MOLECULAR ECOLOGY

Diversification in the Andes: Age and origins of South American Heliotropium lineages (Heliotropiaceae, Boraginales)

(2011) Federico Luebert et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Are pollen fossils useful for calibrating relaxed molecular clock dating of phylogenies? A comparative study using Myrtaceae

(2011) Andrew H. Thornhill et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Calibrated Tree Priors for Relaxed Phylogenetics and Divergence Time Estimation

(2011) Joseph Heled et al.   SYSTEMATIC BIOLOGY

Testing the Impact of Calibration on Molecular Divergence Times Using a Fossil-Rich Group: The Case of Nothofagus (Fagales)

(2011) Hervé Sauquet et al.   SYSTEMATIC BIOLOGY

Best Practices for Justifying Fossil Calibrations

(2011) James F. Parham et al.   SYSTEMATIC BIOLOGY

Phylogenetics of Puya (Bromeliaceae): Placement, major lineages, and evolution of Chilean species

(2010) Rachel Schmidt Jabaily et al.   AMERICAN JOURNAL OF BOTANY

The age and diversification of the angiosperms re-revisited

(2010) Charles D. Bell et al.   AMERICAN JOURNAL OF BOTANY

The uneven phylogeny and biogeography of Erodium (Geraniaceae): radiations in the Mediterranean and recent recurrent intercontinental colonization

(2010) Omar Fiz-Palacios et al.   ANNALS OF BOTANY

CALIBRATING DIVERGENCE TIMES ON SPECIES TREES VERSUS GENE TREES: IMPLICATIONS FOR SPECIATION HISTORY OF APHELOCOMA JAYS

(2010) John E. McCormack et al.   EVOLUTION

Extreme Reconfiguration of Plastid Genomes in the Angiosperm Family Geraniaceae: Rearrangements, Repeats, and Codon Usage

(2010) M. M. Guisinger et al.   MOLECULAR BIOLOGY AND EVOLUTION

Constraints on clade ages from fossil outgroups

(2010) Matthew M. Hedman   PALEOBIOLOGY

Estimating the age of fire in the Cape flora of South Africa from an orchid phylogeny

(2010) B. Bytebier et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Amazonia Through Time: Andean Uplift, Climate Change, Landscape Evolution, and Biodiversity

(2010) C. Hoorn et al.   SCIENCE

Accommodating Heterogenous Rates of Evolution in Molecular Divergence Dating Methods: An Example Using Intercontinental Dispersal of Plestiodon (Eumeces) Lizards

(2010) Matthew C. Brandley et al.   SYSTEMATIC BIOLOGY

Dating Primate Divergences through an Integrated Analysis of Palaeontological and Molecular Data

(2010) Richard D. Wilkinson et al.   SYSTEMATIC BIOLOGY

Using Fossils to Break Long Branches in Molecular Dating: A Comparison of Relaxed Clocks Applied to the Origin of Angiosperms

(2010) Susana Magallón   SYSTEMATIC BIOLOGY

Angiosperm phylogeny inferred from sequences of four mitochondrial genes

(2010) Yin-Long QIU et al.   Journal of Systematics and Evolution

Calibrating the Tree of Life: fossils, molecules and evolutionary timescales

(2009) Félix Forest   ANNALS OF BOTANY

THE ANDES: A GEOLOGICAL OVERVIEW FROM A BIOLOGICAL PERSPECTIVE

(2009) Alan Graham   ANNALS OF THE MISSOURI BOTANICAL GARDEN

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III

(2009)   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Nuclear ribosomal spacer regions in plant phylogenetics: problems and prospects

(2009) Péter Poczai et al.   MOLECULAR BIOLOGY REPORTS

Mutational dynamics and phylogenetic utility of noncoding chloroplast DNA

(2009) Thomas Borsch et al.   PLANT SYSTEMATICS AND EVOLUTION

Tracing the impact of the Andean uplift on Neotropical plant evolution

(2009) A. Antonelli et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rosid radiation and the rapid rise of angiosperm-dominated forests

(2009) H. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Accounting for Calibration Uncertainty in Phylogenetic Estimation of Evolutionary Divergence Times

(2009) Simon Y. W. Ho et al.   SYSTEMATIC BIOLOGY

The Impact of the Representation of Fossil Calibrations on Bayesian Estimation of Species Divergence Times

(2009) Jun Inoue et al.   SYSTEMATIC BIOLOGY

Angiosperm diversification through time

(2008) Susana Magallón et al.   AMERICAN JOURNAL OF BOTANY

A Simple Method for Bracketing Absolute Divergence Times on Molecular Phylogenies Using Multiple Fossil Calibration Points

(2008) Charles R. Marshall   AMERICAN NATURALIST

Climate, Niche Evolution, and Diversification of the “Bird‐Cage” Evening Primroses (Oenothera, Sections Anogra and Kleinia)

(2008) Margaret E. K. Evans et al.   AMERICAN NATURALIST

Selection of Fossils for Calibration of Molecular Dating Models1

(2008) Maria A. Gandolfo et al.   ANNALS OF THE MISSOURI BOTANICAL GARDEN

Branch-length estimation bias misleads molecular dating for a vertebrate mitochondrial phylogeny

(2008) Matthew J. Phillips   GENE

Genome-wide analyses of Geraniaceae plastid DNA reveal unprecedented patterns of increased nucleotide substitutions

(2008) M. M. Guisinger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Origin, adaptive radiation and diversification of the Hawaiian lobeliads (Asterales: Campanulaceae)

(2008) T. J Givnish et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogeny and Historical Biogeography of Geraniaceae in Relation to Climate Changes and Pollination Ecology

(2008) Omar Fiz et al.   SYSTEMATIC BOTANY