Article
Biochemistry & Molecular Biology
Shan Yang, Na Chu, Hongkai Zhou, Jiashuo Li, Naijie Feng, Junbo Su, Zuhu Deng, Xuefeng Shen, Dianfeng Zheng
Summary: This study investigated the molecular mechanism of sugarcane's response to drought stress (DS) and the potential alleviating effects of chitooligosaccharide (COS). Transcriptome and metabolome analyses were performed on sugarcane under three different treatment groups. The results revealed that DS significantly affected the photosynthesis of sugarcane and COS treatment could alleviate these negative effects. Metabolome analysis identified specific metabolites related to DS, and COS treatment reduced their content. Overall, this study provides valuable insights into the physiological and molecular responses of sugarcane to DS and demonstrates the potential of COS as a protective agent.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Plant Sciences
Lungowe Mulozi, Amaranatha R. Vennapusa, Sathya Elavarthi, Oluwatomi E. Jacobs, Krishnanand P. Kulkarni, Purushothaman Natarajan, Umesh K. Reddy, Kalpalatha Melmaiee
Summary: Sugar maple trees are highly vulnerable to drought and this study investigates the physiological, biochemical, and molecular responses of sugar maple saplings to drought stress. The study finds that with increasing drought stress time, chlorophyll and Normalized Difference Vegetation Index decrease significantly. Biochemical changes include higher accumulation of malondialdehyde, proline, and peroxidase activity. Transcriptome analysis identifies a total of 14,099 differentially expressed genes, with transcription factors and stress-responsive genes being predominant.
FRONTIERS IN PLANT SCIENCE
(2023)
Article
Plant Sciences
Jinxing Wei, Linghui Xu, Yu Shi, Tianfang Cheng, Wenlan Tan, Yongguo Zhao, Chunsheng Li, Xinyu Yang, Lejun Ouyang, Mingken Wei, Junxia Wang, Guangyuan Lu
Summary: By transcriptomic techniques, the gene networks and pathways involved in drought response during seed germination in leafy Indian mustard were identified, deepening our understanding of drought responses in this crop and providing potential target genes for genetic improvement of drought tolerance.
PLANT PHYSIOLOGY AND BIOCHEMISTRY
(2023)
Article
Plant Sciences
Xu Wang, Xinlei Yang, Yucheng Feng, Phat Dang, Wenwen Wang, Rita Graze, Josh P. Clevenger, Ye Chu, Peggy Ozias-Akins, Corley Holbrook, Charles Chen
Summary: This study identified drought-responsive genes in different peanut genotypes under drought stress, revealing that tolerant genotypes adjust more related genes in defense response and protein modification to combat drought. The research sheds light on breeding advanced peanut lines to enhance drought tolerance by expanding the understanding of underlying mechanisms.
FRONTIERS IN PLANT SCIENCE
(2021)
Article
Genetics & Heredity
Juyun Zheng, Zeliang Zhang, Yajun Liang, Zhaolong Gong, Nala Zhang, Allah Ditta, Zhiwei Sang, Junduo Wang, Xueyuan Li
Summary: China's cotton industry is hindered by acute agricultural water shortages, particularly in the province of Xinjiang. Discovering drought resistance genes and breeding drought-resistant cotton varieties are crucial for the success of the industry. This study used transcriptome sequencing to identify drought-resistant candidate genes and revealed their mechanisms in enhancing plant drought resistance.
Article
Genetics & Heredity
Mingqian Li, Hainan Li, Anni Sun, Liwei Wang, Chuanyou Ren, Jiang Liu, Xining Gao
Summary: This study investigated the response mechanism underlying soybean resistance to drought stress. Differentially expressed genes and key metabolic pathways related to soybean drought resistance were identified, and the impact of severe drought on soybean yield was evaluated.
FRONTIERS IN GENETICS
(2022)
Article
Biotechnology & Applied Microbiology
R. Manimekalai, A. Selvi, Jini Narayanan, Ram Vannish, R. Shalini, S. Gayathri, V. P. Rabisha
Summary: This study compared the physiological and molecular responses of cultivated and wild sugarcane species to oxidative stress. The results showed that wild species have higher resistance to oxidative stress, with lower leaf-rolling and leaf-tip drying. The study also found that the expression of several genes, such as histone acetyltransferase and cellulose synthase, in the wild species was consistent with RNA-seq results. This is the first report on the oxidative stress response in cultivated and wild sugarcane species.
Article
Biology
Pilar Corredor-Moreno, Roshani Badgami, Sally Jones, Diane G. O. Saunders
Summary: A transcriptome time course of Puccinia striiformis f. sp. tritici (Pst) infection reveals that nuclear genes encoding chloroplast-localized proteins are manipulated during infection, highlighting TaCSP41a disruption as a target for resistance breeding programs.
COMMUNICATIONS BIOLOGY
(2022)
Article
Plant Sciences
Qing Jiang, Xiuting Hua, Huihong Shi, Jia Liu, Yuan Yuan, Zhen Li, Shuangyu Li, Meiqing Zhou, Chongyang Yin, Meijie Dou, Nameng Qi, Yongjun Wang, Muqing Zhang, Ray Ming, Haibao Tang, Jisen Zhang
Summary: We analyzed RNA-sequencing samples to investigate the mechanisms behind differences in photosynthesis and sugar accumulation between Saccharum spontaneum and Saccharum officinarum. The divergences in sugar accumulation were found to be due to enrichment of carbohydrate metabolism and the pentose phosphate pathway. Compared to S. officinarum, S. spontaneum showed higher enrichment of photosynthesis and more complex regulation of photosynthesis-related genes, as well as a lack of gene interactions with sulfur assimilation stimulated by photorespiration.
Article
Forestry
Kaikai Zhu, Lu Wei, Wenjuan Ma, Xiaoli Hu, Juan Zhao, Pengpeng Tan, Hui Liu, Gang Feng, Pinghua Fan, Fangren Peng
Summary: This study analyzed the transcriptome data of pecan trees under drought stress and identified thousands of differentially expressed genes (DEGs) involved in the response to drought. The study also provided insights into the functions of these drought-responsive genes and the molecular basis of pecan's drought stress response.
Article
Horticulture
Ariana Silva Santos, Edson Mario de Andrade, Andressa Rodrigues de Oliveira Sousa, Marcos Mota do Carmo Costa, Roberto Togawa, Priscila Grynberg, Carlos Priminho Pirovani, Saulo Alves Santos Oliveira, Walter dos Santos Soares Filho, Mauricio Antonio Coelho Filho, Abelmon da Silva Gesteira, Claudia Fortes Ferreira
Summary: This study analyzed the transcriptomes of citrus rootstocks 'Sunki Maravilha' and 'Sunki Tropical' under water deficit conditions, revealing significant gene expression variations and providing candidate genes for engineering or breeding citrus plants with drought tolerance. The differentially expressed genes identified are involved in various biological processes and molecular functions, with a focus on oxidoreductase, protein phosphorylation, transcriptional regulation, ligation processes, and response to oxidative stress.
SCIENTIA HORTICULTURAE
(2021)
Article
Plant Sciences
Fang Yang, Guanghui Lv
Summary: This study utilized transcriptomic and metabolomic analyses to investigate the response mechanisms of Haloxylon ammodendron and Haloxylon persicum to drought stress. The results showed that these plants exhibited adaptability at the morphological and physiological levels through the regulation of genes and metabolites. The findings provide new insights into the molecular basis of drought tolerance in Haloxylon species.
FRONTIERS IN PLANT SCIENCE
(2022)
Article
Plant Sciences
Wanlong Yang, Na Li, Yuxin Fan, Biying Dong, Zhihua Song, Hongyan Cao, Tingting Du, Tengyue Liu, Meng Qi, Lili Niu, Dong Meng, Qing Yang, Yujie Fu
Summary: This study demonstrates that ABA can enhance drought resistance in pigeon pea by regulating the accumulation of flavonoids through secondary metabolism. ABA treatment led to significant changes in flavonoid biosynthesis pathways, with key enzyme genes being up-regulated. Transcriptome analysis revealed potential involvement of multiple transcription factors in the regulation of flavonoid accumulation, and RT-PCR confirmed their regulation by ABA. High Performance Liquid Chromatography analysis showed increased content of genistein, genistin and pterostilbene in pigeon pea treated with ABA under drought stress.
ENVIRONMENTAL AND EXPERIMENTAL BOTANY
(2021)
Article
Plant Sciences
Sina Nouraei, Md Sultan Mia, Hui Liu, Neil C. Turner, Guijun Yan
Summary: This study analyzed gene expression profiling in wheat to investigate the genetic control of drought tolerance. The researchers identified candidate genes and genetic markers associated with the qDSI.4B.1 locus, which can be used in breeding programs for drought tolerance. The study also revealed the biological processes involved in the response to drought stress.
FRONTIERS IN PLANT SCIENCE
(2022)
Article
Forestry
Jing Tian, Yue Pang, Zhong Zhao
Summary: Sophora japonica, a native leguminous tree species in China, exhibits high stress tolerance and long lifespan. RNA-seq analysis under drought and N starvation conditions revealed similar numbers of transcripts in S. japonica roots, with drought inducing more upregulated genes and N starvation inducing more downregulated genes. N starvation may aggravate drought stress by downregulating genes related to carbon metabolism, ribosome, arginine biosynthesis pathway, etc.
Article
Biotechnology & Applied Microbiology
Danielly Beraldo dos Santos Silva, Larissa Fernanda Simielli Fonseca, Ana Fabricia Braga Magalhaes, Maria Malane Magalhaes Muniz, Fernando Baldi, Jesus Aparecido Ferro, Luis Artur Loyola Chardulo, Daniel Guariz Pinheiro, Lucia Galvao de Albuquerque
Article
Biotechnology & Applied Microbiology
Larissa Fernanda Simielli Fonseca, Danielly Beraldo dos Santos Silva, Daniele Fernanda Jovino Gimenez, Fernando Baldi, Jesus Aparecido Ferro, Luis Artur Loyola Chardulo, Lucia Galvao de Albuquerque
Article
Immunology
Poliana Fernanda Giachetto, Rodrigo Casquero Cunha, Antonio Nhani Jr, Marcos Valerio Garcia, Jesus Aparecido Ferro, Renato Andreotti
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY
(2020)
Article
Agronomy
Jessica Rosset Ferreira, Gisele Abigail Montan Torres, Luciano Consoli, Gabriela Andriolio Camilotti, Sandra Maria Mansur Scagliusi, Antonio Nhani, Caroline Turchetto, Carolina Cardoso Deuner, Rachel Goddard, Paul Nicholson
Summary: This study identified wheat quantitative trait loci (QTLs) conferring resistance to blast disease caused by the Magnaporthe oryzae Triticum pathotype (MoT), providing insights into the distribution and major mechanisms of related genes, and suggesting potential pathways for developing blast-resistant wheat cultivars.
Review
Food Science & Technology
Maria Malane Magalhaes Muniz, Larissa Fernanda Simielli Fonseca, Danielly Beraldo dos Santos Silva, Hinayah Rojas de Oliveira, Fernando Baldi, Artur Loyola Chardulo, Jesus Aparecido Ferro, Angela Canovas, Lucia Galvao de Albuquerque
Summary: The study utilized WBSF and MFI methodologies to measure beef tenderness and identified differentially expressed transcripts associated with tenderness traits, particularly novel mRNA isoforms potentially affecting muscle aging process, suggesting potential candidates for selecting animals with improved meat tenderness.
Article
Microbiology
Danilo Bueno, Danielle B. Pedrolli, Paula M. M. Martins, Daniela A. Bocchini, Karen C. M. Moraes, Agda P. Facincani, Jesus A. Ferro, Alessandro M. Varani, Michelle M. Pena, Henrique Ferreira
Summary: ACC is caused by X. citri, with no cure currently available, requiring special agricultural practices to prevent spreading. Understanding X. citri's basic biology is crucial for predicting potential genetic targets for controlling ACC.
Article
Green & Sustainable Science & Technology
Camila G. C. Lemes, Isabella F. Cordeiro, Camila H. de Paula, Ana K. Silva, Flavio F. do Carmo, Luciana H. Y. Kamino, Flavia M. S. Carvalho, Juan C. Caicedo, Jesus A. Ferro, Leandro M. Moreira
Summary: This study identified 15 bacterial isolates from ferruginous caves of the Brazilian Iron Quadrangle that act as both biocontrollers and plant growth-promoting bacteria, offering potential as sustainable alternatives to reduce the use of pesticides and chemical fertilizers in agriculture. These isolates could be important candidates for future investigations in planta.
Article
Virology
Fernando Sartori Pereira, Lucas Antonio Stempkowski, Thor Vinicius Martins Fajardo, Antonio Nhani Junior, Douglas Lau, Talita Bernardon Mar, Samara Campos do Nascimento, Amauri Bogo, Ricardo Trezzi Casa, Fabio Nascimento da Silva
Summary: Since 1948, pale yellow wheat spike symptoms have been observed in southern Brazil, and they were found to be associated with tenuiviruses. However, there is still limited information about this pathosystem. In a recent study, the first sequences of wheat white spike virus were characterized using high-throughput sequencing, revealing a new species in the family Phenuiviridae, genus Tenuivirus.
ARCHIVES OF VIROLOGY
(2022)
Article
Microbiology
Amanda C. P. de Oliveira, Rafael M. Ferreira, Maria Ines T. Ferro, Jesus A. Ferro, Caio Zamuner, Henrique Ferreira, Alessandro M. Varani
Summary: This study investigates the role and evolutionary history of a multidomain enzyme, XAC4296, in Xanthomonas citri subsp. citri. The experimental characterization of XAC4296 reveals its expression during plant-pathogen interaction and its impact on Citrus Canker progression. The study also suggests that XAC4296 may contribute to resistance to beta-lactam antibiotics and shows a functional relationship with central carbon and cell wall metabolism. These findings provide new insights into multidomain proteins and antimicrobial resistance in the Xanthomonadaceae family.
Article
Agriculture, Dairy & Animal Science
Marta Serna-Garcia, Larissa Fernanda Simielli Fonseca, Joaquin Javier Panadero Romero, Julian Carretero Asuncion, Danielly Beraldo dos Santos Silva, Bruna Maria Salatta, Gabriela Bonfa Frezarim, Maria Eugenia Zerlotti Mercadante, Sarah Figueiredo Martins Bonilha, Jesus Aparecido Ferro, Lucia Galvao De Albuquerque
Summary: By studying the RNA-seq data of Nellore cattle, we identified genes and metabolic pathways associated with residual feed intake (RFI) and identified potential gene markers. This study is of great significance for quantitative methods of animal husbandry and management, and can help select more efficient animals, thus reducing meat production costs and environmental impacts.
Article
Agronomy
Joice de Oliveira Leite Silva, Renan Goncalves da Silva, Lucas de Faria Nogueira, Sonia Marli Zingaretti
Summary: This study identified key regulatory mechanisms of miRNA expression in sugarcane under aluminum toxicity stress, with miR395 involved in detoxification and miR160, miR6225-5p, and miR167 participating in lateral root formation, enhancing tolerance in the genotype. These findings could be important for biotechnological strategies aiming at miRNA silencing or gene overexpression, as well as for future genetic improvement programs focused on developing abiotic stress-tolerant sugarcane genotypes.
CROP BREEDING AND APPLIED BIOTECHNOLOGY
(2021)
Meeting Abstract
Agriculture, Dairy & Animal Science
Malane M. Muniz, Larissa Fernanda Simielli Fonseca, Angela Canovas, Danielly Beraldo Dos Santos Silva, Jesus Aparecido Ferro, Artur Loyola Chardulo, Fernando Baldi, Lucia Galvao de Albuquerque
JOURNAL OF ANIMAL SCIENCE
(2020)
Article
Multidisciplinary Sciences
Erica Barbosa Felestrino, Angelica Bianchini Sanchez, Washington Luiz Caneschi, Camila Gracyelle de Carvalho Lemes, Renata de Almeida Barbosa Assis, Isabella Ferreira Cordeiro, Natasha Peixoto Fonseca, Morghana Marina Villa, Izadora Tabuso Vieira, Luciana Hiromi Yoshino Kamino, Flavio Fonseca do Carmo, Aline Maria da Silva, Andrew Maltez Thomas, Jose Salvatore Leister Patane, Fernanda Carla Ferreira, Leandro Grassi de Freitas, Alessandro de Mello Varani, Jesus Aparecido Ferro, Robson Soares Silva, Nalvo Franco Almeida, Camila Carriao Machado Garcia, Joao Carlos Setubal, Leandro Marcio Moreira
Article
Mathematical & Computational Biology
Adriano Ferrasa, Mayara M. Murata, Teresa D. C. G. Cofre, Juliana S. Cavallini, Gustavo Peron, Maria H. M. Juliao, Jose Belasque, Henrique Ferreira, Maria Ines T. Ferro, Rui P. Leite, Helen A. Penha, Flavia M. S. Carvalho, Alessandro M. Varani, Roberto H. Herai, Jesus A. Ferro
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION
(2020)
Article
Agronomy
Amanda Savi, Eduardo Silva Gorayeb, Samara Campos Nascimento, Caroline Bolson de Faria, Thor Vinicius Martins Fajardo, Antonio Nhani Junior, Amami Bogo, Ricardo Trezzi Casa, Fabio Nascimento da Silva
Summary: The study characterized the Physalis rugose mosaic virus (PhyRMV) associated with Physalis peruviana and evaluated its transmission through seeds, finding it unlikely to be transmitted through physalis seeds.