GR-Align: fast and flexible alignment of protein 3D structures using graphlet degree similarity

Integrative network alignment reveals large regions of global network similarity in yeast and human

(2011) Oleksii Kuchaiev et al.   BIOINFORMATICS

A Spectral Approach to Protein Structure Alignment

(2011) Y Shibberu et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Maximum Contact Map Overlap Revisited

(2011) Rumen Andonov et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Fast overlapping of protein contact maps by alignment of eigenvectors

(2010) Pietro Di Lena et al.   BIOINFORMATICS

A CROC stronger than ROC: measuring, visualizing and optimizing early retrieval

(2010) S. J. Swamidass et al.   BIOINFORMATICS

PAUL: protein structural alignment using integer linear programming and Lagrangian relaxation

(2009) Inken Wohlers et al.   BMC BIOINFORMATICS

Advances and pitfalls of protein structural alignment

(2009) Hitomi Hasegawa et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Systematic comparison of SCOP and CATH: a new gold standard for protein structure analysis

(2009) Gergely Csaba et al.   BMC STRUCTURAL BIOLOGY

A simple and fast heuristic for protein structure comparison

(2008) David A Pelta et al.   BMC BIOINFORMATICS

Matt: Local Flexibility Aids Protein Multiple Structure Alignment

(2008) Matthew Menke et al.   PLoS Computational Biology