kmacs: the k -mismatch average common substring approach to alignment-free sequence comparison

Fast alignment-free sequence comparison using spaced-word frequencies

(2014) Chris-Andre Leimeister et al.   BIOINFORMATICS

Spaced words and kmacs: fast alignment-free sequence comparison based on inexact word matches

(2014) Sebastian Horwege et al.   NUCLEIC ACIDS RESEARCH

kClust: fast and sensitive clustering of large protein sequence databases

(2013) Maria Hauser et al.   BMC BIOINFORMATICS

Alignment-free phylogeny of whole genomes using underlying subwords

(2012) Matteo Comin et al.   Algorithms for Molecular Biology

Variable length local decoding and alignment-free sequence comparison

(2012) Gilles Didier et al.   THEORETICAL COMPUTER SCIENCE

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Genome characteristics of a generalist marine bacterial lineage

(2010) Ryan J Newton et al.   ISME Journal

Efficient estimation of pairwise distances between genomes

(2009) Mirjana Domazet-Lošo et al.   BIOINFORMATICS

Estimating Mutation Distances from Unaligned Genomes

(2009) Bernhard Haubold et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions

(2009) Gregory E. Sims et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA