MIRPIPE: quantification of microRNAs in niche model organisms

iMir: An integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-Seq

(2013) Giorgio Giurato et al.   BMC BIOINFORMATICS

Transcriptome and genome sequencing uncovers functional variation in humans

(2013) Tuuli Lappalainen et al.   NATURE

Diversifying microRNA sequence and function

(2013) Stefan L. Ameres et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

BLAST: a more efficient report with usability improvements

(2013) Grzegorz M. Boratyn et al.   NUCLEIC ACIDS RESEARCH

Next Generation Sequencing Reveals the Expression of a Unique miRNA Profile in Response to a Gram-Positive Bacterial Infection

(2013) Nathan Lawless et al.   PLoS One

High-efficiency RNA cloning enables accurate quantification of miRNA expression by deep sequencing

(2013) Zhaojie Zhang et al.   GENOME BIOLOGY

miREvo: an integrative microRNA evolutionary analysis platform for next-generation sequencing experiments

(2012) Ming Wen et al.   BMC BIOINFORMATICS

miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data

(2012) Jiyuan An et al.   NUCLEIC ACIDS RESEARCH

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY