Topologically inferring risk-active pathways toward precise cancer classification by directed random walk

Subpathway-GM: identification of metabolic subpathways via joint power of interesting genes and metabolites and their topologies within pathways

(2013) Chunquan Li et al.   NUCLEIC ACIDS RESEARCH

Pathway-based classification of cancer subtypes

(2012) Shinuk Kim et al.   Biology Direct

Core module biomarker identification with network exploration for breast cancer metastasis

(2012) Ruoting Yang et al.   BMC BIOINFORMATICS

LIBSVM

(2012) Chih-Chung Chang et al.   ACM Transactions on Intelligent Systems and Technology

pathClass: an R-package for integration of pathway knowledge into support vector machines for biomarker discovery

(2011) M. Johannes et al.   BIOINFORMATICS

Systems biology of interstitial lung diseases: integration of mRNA and microRNA expression changes

(2011) Ji-Hoon Cho et al.   BMC Medical Genomics

Hydroxycamptothecin-loaded Fe3O4 nanoparticles induce human lung cancer cell apoptosis through caspase-8 pathway activation and disrupt tight junctions

(2011) Gen Zhang et al.   CANCER SCIENCE

Leaders in Social Networks, the Delicious Case

(2011) Linyuan Lü et al.   PLoS One

Integration of pathway knowledge into a reweighted recursive feature elimination approach for risk stratification of cancer patients

(2010) Marc Johannes et al.   BIOINFORMATICS

Integration of multiple data sources to prioritize candidate genes using discounted rating system

(2010) Yongjin Li et al.   BMC BIOINFORMATICS

Current and emerging biomarkers in breast cancer: prognosis and prediction

(2010) Marion T Weigel et al.   ENDOCRINE-RELATED CANCER

HER2/ErbB2-induced Breast Cancer Cell Migration and Invasion Require p120 Catenin Activation of Rac1 and Cdc42

(2010) Emhonta Johnson et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Gene expression in nontumoral liver tissue and recurrence-free survival in hepatitis C virus-positive hepatocellular carcinoma

(2010) Masato Tsuchiya et al.   Molecular Cancer

Systematic sequencing of renal carcinoma reveals inactivation of histone modifying genes

(2010) Gillian L. Dalgliesh et al.   NATURE

Identification of functional modules that correlate with phenotypic difference: the influence of network topology

(2010) Jui-Hung Hung et al.   GENOME BIOLOGY

SubpathwayMiner: a software package for flexible identification of pathways

(2009) C. Li et al.   NUCLEIC ACIDS RESEARCH

Accurate and Reliable Cancer Classification Based on Probabilistic Inference of Pathway Activity

(2009) Junjie Su et al.   PLoS One

Walking the Interactome for Prioritization of Candidate Disease Genes

(2008) Sebastian Köhler et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Loss of tight junction barrier function and its role in cancer metastasis

(2008) Tracey A. Martin et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Genome-wide expression profile of sporadic gastric cancers with microsatellite instability

(2008) Mariarosaria D’Errico et al.   EUROPEAN JOURNAL OF CANCER

Global gene expression analysis reveals specific patterns of cell junctions in non-small cell lung cancer subtypes

(2008) Ruprecht Kuner et al.   LUNG CANCER

Gene Expression Signature of Cigarette Smoking and Its Role in Lung Adenocarcinoma Development and Survival

(2008) Maria Teresa Landi et al.   PLoS One

Inferring Pathway Activity toward Precise Disease Classification

(2008) Eunjung Lee et al.   PLoS Computational Biology

A Precisely Regulated Gene Expression Cassette Potently Modulates Metastasis and Survival in Multiple Solid Cancers

(2008) Kun Yu et al.   PLoS Genetics