ThreaDom: extracting protein domain boundary information from multiple threading alignments

DoBo: Protein domain boundary prediction by integrating evolutionary signals and machine learning

(2011) Jesse Eickholt et al.   BMC BIOINFORMATICS

Intra-Chain 3D Segment Swapping Spawns the Evolution of New Multidomain Protein Architectures

(2011) András Szilágyi et al.   JOURNAL OF MOLECULAR BIOLOGY

DROP: an SVM domain linker predictor trained with optimal features selected by random forest

(2010) Teppei Ebina et al.   BIOINFORMATICS

Detailed Analysis of Function Divergence in a Large and Diverse Domain Superfamily: Toward a Refined Protocol of Function Classification

(2010) Benoit H. Dessailly et al.   STRUCTURE

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Assessment of domain boundary predictions and the prediction of intramolecular contacts in CASP8

(2009) Iakes Ezkurdia et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

I-TASSER: Fully automated protein structure prediction in CASP8

(2009) Yang Zhang   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Progress and challenges in protein structure prediction

(2008) Yang Zhang   CURRENT OPINION IN STRUCTURAL BIOLOGY

DomNet: Protein Domain Boundary Prediction Using Enhanced General Regression Network and New Profiles

(2008) Paul D. Yoo et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

OPUS-Dom: Applying the Folding-Based Method VECFOLD to Determine Protein Domain Boundaries

(2008) Yinghao Wu et al.   JOURNAL OF MOLECULAR BIOLOGY

FIEFDom: a transparent domain boundary recognition system using a fuzzy mean operator

(2008) R. Bondugula et al.   NUCLEIC ACIDS RESEARCH

MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information

(2008) Sitao Wu et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS