Gene Sets Net Correlations Analysis (GSNCA): a multivariate differential coexpression test for gene sets

Ensuring the statistical soundness of competitive gene set approaches: gene filtering and genome-scale coverage are essential

(2013) Shailesh Tripathi et al.   NUCLEIC ACIDS RESEARCH

Gene set analysis for self-contained tests: complex null and specific alternative hypotheses

(2012) Y. Rahmatallah et al.   BIOINFORMATICS

Centrality-based pathway enrichment: a systematic approach for finding significant pathways dominated by key genes

(2012) Zuguang Gu et al.   BMC Systems Biology

DiffCorr: An R package to analyze and visualize differential correlations in biological networks

(2012) Atsushi Fukushima   GENE

Camera: a competitive gene set test accounting for inter-gene correlation

(2012) Di Wu et al.   NUCLEIC ACIDS RESEARCH

Assessment Method for a Power Analysis to Identify Differentially Expressed Pathways

(2012) Shailesh Tripathi et al.   PLoS One

Statistical Inference and Reverse Engineering of Gene Regulatory Networks from Observational Expression Data

(2012) Frank Emmert-Streib et al.   Frontiers in Genetics

Molecular signatures database (MSigDB) 3.0

(2011) A. Liberzon et al.   BIOINFORMATICS

An Empirical Bayesian Approach for Identifying Differential Coexpression in High-Throughput Experiments

(2011) John A. Dawson et al.   BIOMETRICS

Link-based quantitative methods to identify differentially coexpressed genes and gene Pairs

(2011) Hui Yu et al.   BMC BIOINFORMATICS

Capturing changes in gene expression dynamics by gene set differential coordination analysis

(2011) Tianwei Yu et al.   GENOMICS

DiffCoEx: a simple and sensitive method to find differentially coexpressed gene modules

(2010) Bruno M Tesson et al.   BMC BIOINFORMATICS

A semi-parametric Bayesian model for unsupervised differential co-expression analysis

(2010) Johannes M Freudenberg et al.   BMC BIOINFORMATICS

ENHANCING BIOLOGICAL RELEVANCE OF A WEIGHTED GENE CO-EXPRESSION NETWORK FOR FUNCTIONAL MODULE IDENTIFICATION

(2010) SANTITHAM PROM-ON et al.   Journal of Bioinformatics and Computational Biology

Unite and conquer: univariate and multivariate approaches for finding differentially expressed gene sets

(2009) Galina V. Glazko et al.   BIOINFORMATICS

Statistical methods for gene set co-expression analysis

(2009) YounJeong Choi et al.   BIOINFORMATICS

A general modular framework for gene set enrichment analysis

(2009) Marit Ackermann et al.   BMC BIOINFORMATICS

Identifying set-wise differential co-expression in gene expression microarray data

(2009) Sung Cho et al.   BMC BIOINFORMATICS

Gene set internal coherence in the context of functional profiling

(2009) David Montaner et al.   BMC GENOMICS

Tumor suppressors and cell metabolism: a recipe for cancer growth

(2009) R. G. Jones et al.   GENES & DEVELOPMENT

Differential variability analysis of gene expression and its application to human diseases

(2008) J. W.K. Ho et al.   BIOINFORMATICS

Gene-set analysis and reduction

(2008) I. Dinu et al.   BRIEFINGS IN BIOINFORMATICS

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH