KASpOD—a web service for highly specific and explorative oligonucleotide design

Skip the Alignment: Degenerate, Multiplex Primer and Probe Design Using K-mer Matching Instead of Alignments

(2012) David A. Hysom et al.   PLoS One

In situTCE degradation mediated by complex dehalorespiring communities during biostimulation processes

(2012) Eric Dugat-Bony et al.   Microbial Biotechnology

Comprehensive and relaxed search for oligonucleotide signatures in hierarchically clustered sequence datasets

(2011) K. C. Bader et al.   BIOINFORMATICS

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

Detecting unknown sequences with DNA microarrays: explorative probe design strategies

(2011) Eric Dugat-Bony et al.   ENVIRONMENTAL MICROBIOLOGY

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Detecting variants with Metabolic Design, a new software tool to design probes for explorative functional DNA microarray development

(2010) Sébastien Terrat et al.   BMC BIOINFORMATICS

PatMaN: rapid alignment of short sequences to large databases

(2008) Kay Prüfer et al.   BIOINFORMATICS

probeCheck - a central resource for evaluating oligonucleotide probe coverage and specificity

(2008) Alexander Loy et al.   ENVIRONMENTAL MICROBIOLOGY

The rational exploration of microbial diversity

(2008) Christopher Quince et al.   ISME Journal