SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing

DNA methylome analysis using short bisulfite sequencing data

(2012) Felix Krueger et al.   NATURE METHODS

Comparison of alignment software for genome-wide bisulphite sequence data

(2012) Aniruddha Chatterjee et al.   NUCLEIC ACIDS RESEARCH

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

RRBSMAP: a fast, accurate and user-friendly alignment tool for reduced representation bisulfite sequencing

(2011) Yuanxin Xi et al.   BIOINFORMATICS

Systematic assessment of reduced representation bisulfite sequencing to human blood samples: A promising method for large-sample-scale epigenomic studies

(2011) Li Wang et al.   JOURNAL OF BIOTECHNOLOGY

BS Seeker: precise mapping for bisulfite sequencing

(2010) Pao-Yang Chen et al.   BMC BIOINFORMATICS

Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications

(2010) R Alan Harris et al.   NATURE BIOTECHNOLOGY

Quantitative comparison of genome-wide DNA methylation mapping technologies

(2010) Christoph Bock et al.   NATURE BIOTECHNOLOGY

BSMAP: whole genome bisulfite sequence MAPping program

(2009) Yuanxin Xi et al.   BMC BIOINFORMATICS