The identification of short linear motif-mediated interfaces within the human interactome

The Protein Data Bank in Europe (PDBe): bringing structure to biology

(2011) Sameer Velankar et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Attributes of short linear motifs

(2011) Norman E. Davey et al.   Molecular BioSystems

The multiple-specificity landscape of modular peptide recognition domains

(2011) D. Gfeller et al.   Molecular Systems Biology

SLiMSearch 2.0: biological context for short linear motifs in proteins

(2011) N. E. Davey et al.   NUCLEIC ACIDS RESEARCH

ELM--the database of eukaryotic linear motifs

(2011) H. Dinkel et al.   NUCLEIC ACIDS RESEARCH

Minimotif Miner 3.0: database expansion and significantly improved reduction of false-positive predictions from consensus sequences

(2011) T. Mi et al.   NUCLEIC ACIDS RESEARCH

PDZ domains and their binding partners: structure, specificity, and modification

(2010) Ho-Jin Lee et al.   Cell Communication and Signaling

Regulated Degradation of Spindle Assembly Factors by the Anaphase-Promoting Complex

(2010) Ling Song et al.   MOLECULAR CELL

3did: identification and classification of domain-based interactions of known three-dimensional structure

(2010) A. Stein et al.   NUCLEIC ACIDS RESEARCH

The BioGRID Interaction Database: 2011 update

(2010) C. Stark et al.   NUCLEIC ACIDS RESEARCH

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Structure-based prediction of protein-peptide specificity in rosetta

(2010) Christopher A. King et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

WD40 proteins propel cellular networks

(2010) Christian U. Stirnimann et al.   TRENDS IN BIOCHEMICAL SCIENCES

Novel Peptide-Mediated Interactions Derived from High-Resolution 3-Dimensional Structures

(2010) Amelie Stein et al.   PLoS Computational Biology

ADAN: a database for prediction of protein-protein interaction of modular domains mediated by linear motifs

(2009) J. A. Encinar et al.   BIOINFORMATICS

Human Caspases: Activation, Specificity, and Regulation

(2009) Cristina Pop et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The Universal Protein Resource (UniProt) in 2010

(2009)   NUCLEIC ACIDS RESEARCH

Accurate Prediction of Peptide Binding Sites on Protein Surfaces

(2009) Evangelia Petsalaki et al.   PLoS Computational Biology

Prediction of Protein Binding Regions in Disordered Proteins

(2009) Bálint Mészáros et al.   PLoS Computational Biology

Discovery of candidate KEN-box motifs using Cell Cycle keyword enrichment combined with native disorder prediction and motif conservation

(2008) Sushama Michael et al.   BIOINFORMATICS

A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences

(2008) Claudia Chica et al.   BMC BIOINFORMATICS

A new protein linear motif benchmark for multiple sequence alignment software

(2008) Emmanuel Perrodou et al.   BMC BIOINFORMATICS

Understanding eukaryotic linear motifs and their role in cell signaling and regulation

(2008) Francesca Diella   Frontiers in Bioscience-Landmark

The SH3 domain- a family of versatile peptide- and protein-recognition module

(2008) Tomonori Kaneko   Frontiers in Bioscience-Landmark

Prediction of phosphotyrosine signaling networks using a scoring matrix-assisted ligand identification approach

(2008) Lei Li et al.   NUCLEIC ACIDS RESEARCH

NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways

(2008) S. Brohee et al.   NUCLEIC ACIDS RESEARCH