PASS-bis: a bisulfite aligner suitable for whole methylome analysis of Illumina and SOLiD reads

Error-correcting properties of the SOLiD Exact Call Chemistry

(2012) Tim Massingham et al.   BMC BIOINFORMATICS

B-SOLANA: an approach for the analysis of two-base encoding bisulfite sequencing data

(2011) Benjamin Kreck et al.   BIOINFORMATICS

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System

(2010) Brian D. Ondov et al.   BIOINFORMATICS

BS Seeker: precise mapping for bisulfite sequencing

(2010) Pao-Yang Chen et al.   BMC BIOINFORMATICS

PASS: a program to align short sequences

(2009) D. Campagna et al.   BIOINFORMATICS

BSMAP: whole genome bisulfite sequence MAPping program

(2009) Yuanxin Xi et al.   BMC BIOINFORMATICS

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

(2008) Shawn J. Cokus et al.   NATURE