Transformations for the compression of FASTQ quality scores of next-generation sequencing data

Compression of DNA sequence reads in FASTQ format

(2011) Sebastian Deorowicz et al.   BIOINFORMATICS

Efficient storage of high throughput DNA sequencing data using reference-based compression

(2011) M. Hsi-Yang Fritz et al.   GENOME RESEARCH

Compressing Genomic Sequence Fragments Using SlimGene

(2011) Christos Kozanitis et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Manipulation of FASTQ data with Galaxy

(2010) D. Blankenberg et al.   BIOINFORMATICS

G-SQZ: compact encoding of genomic sequence and quality data

(2010) W. Tembe et al.   BIOINFORMATICS

Data structures and compression algorithms for high-throughput sequencing technologies

(2010) Kenny Daily et al.   BMC BIOINFORMATICS

The Sequence Read Archive

(2010) R. Leinonen et al.   NUCLEIC ACIDS RESEARCH

Textual data compression in computational biology: a synopsis

(2009) R. Giancarlo et al.   BIOINFORMATICS

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

(2009) Peter J. A. Cock et al.   NUCLEIC ACIDS RESEARCH

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH