Physical Module Networks: an integrative approach for reconstructing transcription regulation

Transcriptional Regulatory Circuits: Predicting Numbers from Alphabets

(2018) Harold D. Kim et al.   SCIENCE

A Global Protein Kinase and Phosphatase Interaction Network in Yeast

(2010) A. Breitkreutz et al.   SCIENCE

Network-Free Inference of Knockout Effects in Yeast

(2010) Tal Peleg et al.   PLoS Computational Biology

A Physical and Regulatory Map of Host-Influenza Interactions Reveals Pathways in H1N1 Infection

(2009) Sagi D. Shapira et al.   CELL

Toward accurate reconstruction of functional protein networks

(2009) Nir Yosef et al.   Molecular Systems Biology

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line

(2009) Harukazu Suzuki et al.   NATURE GENETICS

Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity

(2009) Esti Yeger-Lotem et al.   NATURE GENETICS

Unbiased Reconstruction of a Mammalian Transcriptional Network Mediating Pathogen Responses

(2009) I. Amit et al.   SCIENCE

Diversity and Complexity in DNA Recognition by Transcription Factors

(2009) G. Badis et al.   SCIENCE

Variation in Homeodomain DNA Binding Revealed by High-Resolution Analysis of Sequence Preferences

(2008) Michael F. Berger et al.   CELL

Structure and function of a transcriptional network activated by the MAPK Hog1

(2008) Andrew P Capaldi et al.   NATURE GENETICS

A Predictive Model of the Oxygen and Heme Regulatory Network in Yeast

(2008) Anshul Kundaje et al.   PLoS Computational Biology

Uncovering a Macrophage Transcriptional Program by Integrating Evidence from Motif Scanning and Expression Dynamics

(2008) Stephen A. Ramsey et al.   PLoS Computational Biology

Computational identification of the normal and perturbed genetic networks involved in myeloid differentiation and acute promyelocytic leukemia

(2008) Li Wei Chang et al.   GENOME BIOLOGY