Improved quality control processing of peptide-centric LC-MS proteomics data

A recursive version of Grubbs' test for detecting multiple outliers in environmental and chemical data

(2010) Ram B. Jain   CLINICAL BIOCHEMISTRY

Combined Statistical Analyses of Peptide Intensities and Peptide Occurrences Improves Identification of Significant Peptides from MS-Based Proteomics Data

(2010) Bobbie-Jo M. Webb-Robertson et al.   JOURNAL OF PROTEOME RESEARCH

Papers on normalization, variable selection, classification or clustering of microarray data

(2009) D. M. Rocke et al.   BIOINFORMATICS

A statistical framework for protein quantitation in bottom-up MS-based proteomics

(2009) Yuliya Karpievitch et al.   BIOINFORMATICS

Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data

(2009) Navdeep Jaitly et al.   BMC BIOINFORMATICS

Statistical Design of Quantitative Mass Spectrometry-Based Proteomic Experiments

(2009) Ann L. Oberg et al.   JOURNAL OF PROTEOME RESEARCH

Performance Metrics for Liquid Chromatography-Tandem Mass Spectrometry Systems in Proteomics Analyses

(2009) Paul A. Rudnick et al.   MOLECULAR & CELLULAR PROTEOMICS

Statistical quality assessment and outlier detection for liquid chromatography-mass spectrometry experiments

(2009) Ole Schulz-Trieglaff et al.   BioData Mining

OutlierD: an R package for outlier detection using quantile regression on mass spectrometry data

(2008) HyungJun Cho et al.   BIOINFORMATICS

arrayQualityMetrics—a bioconductor package for quality assessment of microarray data

(2008) Audrey Kauffmann et al.   BIOINFORMATICS

Statistical Analysis of Relative Labeled Mass Spectrometry Data from Complex Samples Using ANOVA

(2008) Ann L. Oberg et al.   JOURNAL OF PROTEOME RESEARCH

Mixed-Effects Statistical Model for Comparative LC−MS Proteomics Studies†

(2008) D. S. Daly et al.   JOURNAL OF PROTEOME RESEARCH

DESIGN AND ANALYSIS OF QUANTITATIVE DIFFERENTIAL PROTEOMICS INVESTIGATIONS USING LC-MS TECHNOLOGY

(2008) YURY V. BUKHMAN et al.   Journal of Bioinformatics and Computational Biology

Outlier identification in high dimensions

(2007) Peter Filzmoser et al.   COMPUTATIONAL STATISTICS & DATA ANALYSIS

Application of Proteomics in the Discovery of Candidate Protein Biomarkers in a Diabetes Autoantibody Standardization Program Sample Subset

(2007) Thomas O. Metz et al.   JOURNAL OF PROTEOME RESEARCH