COSINE: COndition-SpecIfic sub-NEtwork identification using a global optimization method

Detecting disease associated modules and prioritizing active genes based on high throughput data

(2010) Yu-Qing Qiu et al.   BMC BIOINFORMATICS

DDPC: Dragon Database of Genes associated with Prostate Cancer

(2010) M. Maqungo et al.   NUCLEIC ACIDS RESEARCH

DNA microarrays to define and search for genes associated with obesity

(2009) Yunjung Kim et al.   Biotechnology Journal

A general modular framework for gene set enrichment analysis

(2009) Marit Ackermann et al.   BMC BIOINFORMATICS

Identifying differentially expressed pathways via a mixed integer linear programming model

(2009) Y.-Q. Qiu et al.   IET Systems Biology

Automatic Parameter Learning for Multiple Local Network Alignment

(2009) Jason Flannick et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

The impact of cellular networks on disease comorbidity

(2009) Juyong Park et al.   Molecular Systems Biology

Identifying responsive functional modules from protein-protein interaction network

(2009) Zikai Wu et al.   MOLECULES AND CELLS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Network Properties of Complex Human Disease Genes Identified through Genome-Wide Association Studies

(2009) Fredrik Barrenas et al.   PLoS One

Genome-wide prioritization of disease genes and identification of disease-disease associations from an integrated human functional linkage network

(2009) Bolan Linghu et al.   GENOME BIOLOGY

Evaluation of Genetic Variation Contributing to Differences in Gene Expression between Populations

(2008) Wei Zhang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Walking the Interactome for Prioritization of Candidate Disease Genes

(2008) Sebastian Köhler et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Testing gene set enrichment for subset of genes: Sub-GSE

(2008) Xiting Yan et al.   BMC BIOINFORMATICS

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Network-based global inference of human disease genes

(2008) Xuebing Wu et al.   Molecular Systems Biology

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH

Network properties of genes harboring inherited disease mutations

(2008) I. Feldman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The implications of human metabolic network topology for disease comorbidity

(2008) D.- S. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA