期刊
BIOINFORMATICS
卷 27, 期 9, 页码 1311-1312出版社
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btr117
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资金
- Ministero dell'Istruzione, Universita e Ricerca (MIUR, Italy)
- Laboratorio di Bioinformatica per la Biodiversita Molecolare [DM19410]
- AriSLA - Fondazione Italiana di Ricerca per la SLA
ExpEdit is a web application for assessing RNA editing in human at known or user-specified sites supported by transcript data obtained by RNA-Seq experiments. Mapping data (in SAM/BAM format) or directly sequence reads [in FASTQ/short read archive (SRA) format] can be provided as input to carry out a comparative analysis against a large collection of known editing sites collected in DARNED database as well as other user-provided potentially edited positions. Results are shown as dynamic tables containing University of California, Santa Cruz (UCSC) links for a quick examination of the genomic context.
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