A folding algorithm for extended RNA secondary structures

RNAstructure: software for RNA secondary structure prediction and analysis

(2010) Jessica S Reuter et al.   BMC BIOINFORMATICS

RNAMotifScan: automatic identification of RNA structural motifs using secondary structural alignment

(2010) Cuncong Zhong et al.   NUCLEIC ACIDS RESEARCH

Computational approaches for RNA energy parameter estimation

(2010) M. Andronescu et al.   RNA

NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure

(2009) Douglas H. Turner et al.   NUCLEIC ACIDS RESEARCH

Frequency and isostericity of RNA base pairs

(2009) Jesse Stombaugh et al.   NUCLEIC ACIDS RESEARCH

RNA STRAND: The RNA Secondary Structure and Statistical Analysis Database

(2008) Mirela Andronescu et al.   BMC BIOINFORMATICS

RNAalifold: improved consensus structure prediction for RNA alignments

(2008) Stephan H Bernhart et al.   BMC BIOINFORMATICS

The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data

(2008) Marc Parisien et al.   NATURE