Simple sequence-based kernels do not predict protein-protein interactions

Predicting protein-protein interactions in unbalanced data using the primary structure of proteins

(2010) Chi-Yuan Yu et al.   BMC BIOINFORMATICS

The Genetic Landscape of a Cell

(2010) M. Costanzo et al.   SCIENCE

Critical assessment of sequence-based protein-protein interaction prediction methods that do not require homologous protein sequences

(2009) Yungki Park   BMC BIOINFORMATICS

The Negatome database: a reference set of non-interacting protein pairs

(2009) Pawel Smialowski et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The Universal Protein Resource (UniProt) in 2010

(2009)   NUCLEIC ACIDS RESEARCH

Exploiting Amino Acid Composition for Predicting Protein-Protein Interactions

(2009) Sushmita Roy et al.   PLoS One

Global investigation of protein–protein interactions in yeast Saccharomyces cerevisiae using re-occurring short polypeptide sequences

(2008) S. Pitre et al.   NUCLEIC ACIDS RESEARCH

Using support vector machine combined with auto covariance to predict protein–protein interactions from protein sequences

(2008) Yanzhi Guo et al.   NUCLEIC ACIDS RESEARCH

High-Quality Binary Protein Interaction Map of the Yeast Interactome Network

(2008) H. Yu et al.   SCIENCE