Bayesian sampling of genomic rearrangement scenarios via double cut and join

Combinatorial Structure of Genome Rearrangements Scenarios

(2010) Aïda Ouangraoua et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Efficient Sampling of Parsimonious Inversion Histories with Application to Genome Rearrangement in Yersinia

(2009) István Miklós et al.   Genome Biology and Evolution

A new linear time algorithm to compute the genomic distance via the double cut and join distance

(2009) Anne Bergeron et al.   THEORETICAL COMPUTER SCIENCE

Additions, Losses, and Rearrangements on the Evolutionary Route from a Reconstructed Ancestor to the Modern Saccharomyces cerevisiae Genome

(2009) Jonathan L. Gordon et al.   PLoS Genetics

Enredo and Pecan: Genome-wide mammalian consistency-based multiple alignment with paralogs

(2008) B. Paten et al.   GENOME RESEARCH

Exploring the Solution Space of Sorting by Reversals, with Experiments and an Application to Evolution

(2008) M.D.V. Braga et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Dynamics of Genome Rearrangement in Bacterial Populations

(2008) Aaron E. Darling et al.   PLoS Genetics