Over-optimism in bioinformatics: an illustration

Feature selection in omics prediction problems using cat scores and false nondiscovery rate control

(2010) Miika Ahdesmäki et al.   Annals of Applied Statistics

Small-sample precision of ROC-related estimates

(2010) B. Hanczar et al.   BIOINFORMATICS

Incorporating prior probabilities into high-dimensional classifiers

(2010) P. Hall et al.   BIOMETRIKA

Reproducible research and the substantive context

(2010) N. Keiding   BIOSTATISTICS

Papers on normalization, variable selection, classification or clustering of microarray data

(2009) D. M. Rocke et al.   BIOINFORMATICS

Over-optimism in bioinformatics research

(2009) A.-L. Boulesteix   BIOINFORMATICS

Reporting bias when using real data sets to analyze classification performance

(2009) M. R. Yousefi et al.   BIOINFORMATICS

Classification and biomarker identification using gene network modules and support vector machines

(2009) Malik Yousef et al.   BMC BIOINFORMATICS

Incorporating pathway information into boosting estimation of high-dimensional risk prediction models

(2009) Harald Binder et al.   BMC BIOINFORMATICS

Optimal classifier selection and negative bias in error rate estimation: an empirical study on high-dimensional prediction

(2009) Anne-Laure Boulesteix et al.   BMC Medical Research Methodology

Network-constrained regularization and variable selection for analysis of genomic data

(2008) C. Li et al.   BIOINFORMATICS

Reducing the probability of false positive research findings by pre-publication validation – Experience with a large multiple sclerosis database

(2008) Martin Daumer et al.   BMC Medical Research Methodology

On the Epistemological Crisis in Genomics

(2008) Edward Dougherty   CURRENT GENOMICS