4.5 Review

Folding mechanisms of periplasmic proteins

期刊

出版社

ELSEVIER SCIENCE BV
DOI: 10.1016/j.bbamcr.2013.10.014

关键词

Periplasm; Folding; Chaperone; DegP; HdeA; Spy

向作者/读者索取更多资源

More than one fifth of the proteins encoded by the genome of Escherichia coli are destined to the bacterial cell envelope. Over the past 20 years, the mechanisms by which envelope proteins reach their three-dimensional structure have been intensively studied, leading to the discovery of an intricate network of periplasmic folding helpers whose members have distinct but complementary roles. For instance, the correct assembly of B-barrel proteins containing disulfide bonds depends both on chaperones like SurA and Skp for transport across the periplasm and on protein folding catalysts like DsbA and DsbC for disulfide bond formation. In this review, we provide an overview of the current knowledge about the complex network of protein folding helpers present in the periplasm of E. coli and highlight the questions that remain unsolved. This article is part of a Special Issue entitled: Protein trafficking and secretion in bacteria. Guest Editors: Anastassios Economou and Ross Dalbey. (C) 2013 Elsevier B.V. All rights reserved.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.5
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Review Biochemistry & Molecular Biology

How the assembly and protection of the bacterial cell envelope depend on cysteine residues

Jean-Francois Collet, Seung-Hyun Cho, Bogdan I. Iorga, Camille Goemans

JOURNAL OF BIOLOGICAL CHEMISTRY (2020)

Editorial Material Microbiology

Editorial overview: All in all, it is not just another brick in the wall: new concepts and mechanisms on how bacteria build their wall

Angelika Grundling, Jean-Francois Collet

CURRENT OPINION IN MICROBIOLOGY (2021)

Review Biochemistry & Molecular Biology

Fort CnoX: Protecting Bacterial Proteins From Misfolding and Oxidative Damage

Emile Dupuy, Jean-Francois Collet

Summary: CnoX is a novel protein folding factor that combines holdase chaperone activity with a redox protective function, playing a crucial role under stress conditions to protect proteins from aggregation and irreversible oxidation. It also has a unique ability to cooperate with the GroEL/ES folding machinery, which appears to be conserved during evolution.

FRONTIERS IN MOLECULAR BIOSCIENCES (2021)

Review Microbiology

Lipoproteins in Gram-negative bacteria: new insights into their biogenesis, subcellular targeting and functional roles

Jessica El Rayes, Raquel Rodriguez-Alonso, Jean-Francois Collet

Summary: Bacterial lipoproteins play crucial roles in the cell envelope of Gram-negative bacteria, with recent research focusing on their diverse functions in Escherichia coli and their maturation, sorting, and targeting mechanisms. The identification of lipoproteins on the surface of E. coli and other bacteria has sparked renewed interest in these proteins as potential targets for antibiotic development.

CURRENT OPINION IN MICROBIOLOGY (2021)

Article Biochemistry & Molecular Biology

Disorder is a critical component of lipoprotein sorting in Gram-negative bacteria

Jessica El Rayes, Joanna Szewczyk, Michael Deghelt, Andre Matagne, Bogdan I. Iorga, Seung-Hyun Cho, Jean-Francois Collet, Naemi Csoma

Summary: In Gram-negative bacteria, approximately half of lipoproteins destined for the outer membrane display an intrinsically disordered linker at their N terminus. The unstructured linkers are required for optimal trafficking by the Lol lipoprotein sorting system, re-routing lipoproteins to the inner membrane without them. Replacing the linker with an artificial peptide of similar length and disorder can restore normal outer-membrane targeting in the stress sensor RcsF.

NATURE CHEMICAL BIOLOGY (2021)

Article Multidisciplinary Sciences

Unravelling the collateral damage of antibiotics on gut bacteria

Lisa Maier, Camille V. Goemans, Jakob Wirbel, Michael Kuhn, Claudia Eberl, Mihaela Pruteanu, Patrick Muller, Sarela Garcia-Santamarina, Elisabetta Cacace, Boyao Zhang, Cordula Gekeler, Tisya Banerjee, Exene Erin Anderson, Alessio Milanese, Ulrike Lober, Sofia K. Forslund, Kiran Raosaheb Patil, Michael Zimmermann, Barbel Stecher, Georg Zeller, Peer Bork, Athanasios Typas

Summary: The study categorized the activity spectra of antibiotics in gut bacteria, revealing distinct inhibition patterns of different antibiotic classes. The findings suggest potential strategies to protect beneficial bacteria by screening for drugs that counteract antibiotic activity.

NATURE (2021)

Article Multidisciplinary Sciences

A case of convergent evolution: Several viral and bacterial pathogens hijack RSK kinases through a common linear motif

Frederic Sorgeloos, Michael Peeters, Yohei Hayashi, Fabian Borghese, Nicolas Capelli, Melissa Drappier, Teresa Cesaro, Didier Colau, Vincent Stroobant, Didier Vertommen, Gregory de Bodt, Stephane Messe, Ignasi Forne, Felix Mueller-Planitz, Jean-Francois Collet, Thomas Michiels

Summary: Microbes have evolved to exploit cellular kinases called RSKs, which play a role in defending against pathogens. Kaposi's sarcoma-associated herpesvirus and Yersinia use a similar strategy to manipulate RSKs.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)

Article Genetics & Heredity

Loss of YhcB results in dysregulation of coordinated peptidoglycan, LPS and phospholipid synthesis during Escherichia coli cell growth

Emily C. A. Goodall, Georgia L. Isom, Jessica L. Rooke, Karthik Pullela, Christopher Icke, Zihao Yang, Gabriela Boelter, Alun Jones, Isabel Warner, Rochelle Da Costa, Bing Zhang, James Rae, Wee Boon Tan, Matthias Winkle, Antoine Delhaye, Eva Heinz, Jean-Francois Collet, Adam F. Cunningham, Mark A. Blaskovich, Robert G. Parton, Jeff A. Cole, Manuel Banzhaf, Shu-Sin Chng, Waldemar Vollmer, Jack A. Bryant, Ian R. Henderson

Summary: The cell envelope is crucial for the survival of all domains of life, acting as a barrier to the external environment. Disrupting the envelope is a common strategy in antimicrobial treatment, but there are still gaps in our understanding of how different layers of the envelope are coordinated during growth and division. The study identified a gene, yhcB, that plays a key role in envelope stability, cell permeability, and cell size control, highlighting its potential as a new antimicrobial target.

PLOS GENETICS (2021)

Article Oncology

T Cell-Mediated Targeted Delivery of Anti-PD-L1 Nanobody Overcomes Poor Antibody Penetration and Improves PD-L1 Blocking at the Tumor Site

Pierre -Florent Petit, Raphaele Bombart, Pierre -Hubert Desimpel, Stefan Naulaerts, Laurie Thouvenel, Jean-Francois Collet, Benoit J. Eynde, Jingjing Zhu

Summary: The delivery of anti-PD-L1 nanobody through tumor-targeting T cells shows promise in overcoming the limitations of immunotherapy based on PD-L1-specific antibodies.

CANCER IMMUNOLOGY RESEARCH (2022)

Editorial Material Multidisciplinary Sciences

Bacterial envelope built to a peptidoglycan tune

Michael Deghelt, Jean-Francois Collet

NATURE (2022)

Article Virology

HYGIEIA: HYpothesizing the Genesis of Infectious Diseases and Epidemics through an Integrated Systems Biology Approach

Bradley Ward, Jean Cyr Yombi, Jean-Luc Balligand, Patrice D. Cani, Jean-Francois Collet, Julien de Greef, Joseph P. Dewulf, Laurent Gatto, Vincent Haufroid, Sebastien Jodogne, Benoit Kabamba, Sebastien Pyr Dit Ruys, Didier Vertommen, Laure Elens, Leila Belkhir

Summary: This paper introduces the HYGIEIA project, which aims to study the molecular mechanisms and post-COVID conditions through a multi-omic approach and network medicine analysis. By analyzing high-throughput sequencing and mass-spectrometry data from multiple biological layers, meaningful discoveries are expected and can be translated into improvements in clinical practice.

VIRUSES-BASEL (2022)

Article Biochemistry & Molecular Biology

A molecular device for the redox quality control of GroEL/ES substrates

Emile Dupuy, Sander Egbert Van der Verren, Jiusheng Lin, Mark Alan Wilson, Alix Vincent Daschsbeck, Felipe Viela, Emmanuell Latour, Alexandr Gennaris, Didier Vertommen, Yves Frederic Dufrene, Bogdan Iuliu Lorga, Camille Veronique Goemans, Han Remaut, Jean-Francois Collet

Summary: Hsp60 chaperonins and their Hsp10 cofactors facilitate protein folding. This study reveals that the bacterial chaperonin GroEL forms a stable complex with the chaperedoxin CnoX, and CnoX likely functions as a redox quality-control plugin for GroEL. The findings suggest that Hsp60 molecular plugins have been conserved through evolution, as proteins sharing structural features with CnoX exist in eukaryotes.
Review Microbiology

Envelope-Stress Sensing Mechanism of Rcs and Cpx Signaling Pathways in Gram-Negative Bacteria

Seung-Hyun Cho, Kilian Dekoninck, Jean-Francois Collet

Summary: This review focuses on the role of two outer membrane sensors, RcsF and NlpE, in bacterial stress response. Two models, LPS perturbation model and BAM assembly model, have been proposed to explain the stress sensing mechanism of RcsF. As for NlpE, its function depends on different domains, with NlpE NTD involved in signaling and NlpE CTD playing a key role in sensing adherence to a hydrophobic surface.

JOURNAL OF MICROBIOLOGY (2023)

Article Microbiology

β-Barrels covalently link peptidoglycan and the outer membrane in the α-proteobacterium Brucella abortus

Pierre Godessart, Adelie Lannoy, Marc Dieu, Sander E. Van der Verren, Patrice Soumillion, Jean-Francois Collet, Han Remaut, Patricia Renard, Xavier De Bolle

Summary: In alpha-proteobacteria, the outer membrane is covalently linked to the peptidoglycan through cross-links between beta-barrel-shaped proteins and peptidoglycan, catalyzed by l,d-transpeptidases. The presence of a conserved alanyl-aspartyl motif at the N-terminus of the anchored proteins is crucial for the stability of the outer membrane. This mechanism of attachment may be widespread in alpha-proteobacteria, with potential implications for envelope integrity.

NATURE MICROBIOLOGY (2021)

Article Biochemistry & Molecular Biology

Hsc70 phosphorylation patterns and calmodulin regulate AP2 Clathrin-Coated-Vesicle life span for cell adhesion protein transport

G. F. Senguel, R. Mishra, E. Candiello, P. Schu

Summary: AP2 forms AP2 CCV with clathrin and other coat proteins, and synapses contain different types of CCV. The stability and composition of CCV are regulated by various factors, including Hsc70 and phosphorylation patterns. The knockout of the AP1/O1B complex disrupts synaptic vesicle recycling and endosomal protein sorting, leading to upregulation of endocytosis. Stable CCV, termed stCCV, have distinct characteristics and specialized functions in synaptic plasticity. The phosphorylation of Hsc70 and the levels of kinases play a crucial role in regulating the stability and disassembly of clathrin in CCV.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2024)

Article Biochemistry & Molecular Biology

Enhanced capacity for CaMKII signaling mitigates calcium release related contractile fatigue with high intensity exercise

Martin Fluck, Colline Sanchez, Vincent Jacquemond, Christine Berthier, Marie-Noelle Giraud, Daniel Jacko, Kathe Bersiner, Sebastian Gehlert, Guus Baan, Richard T. Jaspers

Summary: Enhancing CaMKII signaling improves fatigue resistance and contractile characteristics of skeletal muscle by enhancing calcium release.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2024)

Letter Biochemistry & Molecular Biology

SQSTM1/p62 inhibition impairs pro-survival signaling in hypoxic human dendritic cells

Federica Coppola, Sara Monaci, Alessandro Falsini, Carlo Aldinucci, Irene Filippi, Daniela Rossi, Fabio Carraro, Antonella Naldini

Summary: The adaptor protein p62 plays a crucial role in maintaining the survival of dendritic cells (DCs) under hypoxic conditions by preserving Erk1/2 phosphorylation and reducing AMPK activation, thus extending their lifespan to ensure their functions in hypoxic microenvironments.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2024)

Article Biochemistry & Molecular Biology

High-throughput analysis of glycan sorting into extracellular vesicles

Jenifer Pendiuk Goncalves, Jorvani Cruz Villarreal, Sierra A. Walker, Xuan Ning Sharon Tan, Chad Borges, Joy Wolfram

Summary: This study used a mass spectrometry-based approach to assess the differences in glycan features between extracellular vesicles (EVs) and originating cells. The results showed that EVs selectively enriched specific glycan features, particularly those associated with binding to the extracellular matrix. The study also found differences in EV glycan sorting between different metastatic cell lines and mouse models, indicating a potential role of glycan diversity in the metastatic process.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2024)

Article Biochemistry & Molecular Biology

SPOP promotes CREB5 ubiquitination to inhibit MET signaling in liver cancer

De-ao Gong, Peng Zhou, Wen-yi Chang, Jia-yao Yang, Yan-lai Zhang, Ai-long Huang, Ni Tang, Kai Wang

Summary: Liver cancer, ranked sixth globally, is a major contributor to cancer-related mortality. Metastasis is the main cause of treatment failure and deaths in liver cancer. The SPOP-CREB5-MET axis plays a significant role in liver cancer metastasis.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2024)

Article Biochemistry & Molecular Biology

Glioma-derived S100A9 polarizes M2 microglia to inhibit CD8+T lymphocytes for immunosuppression via αv133 integrin/AKT1/TGF131

Ning Huang, Jun Tang, Xiaoyao Yi, Maoxin Zhang, Bin Li, Yuan Cheng, Jin Chen

Summary: This study reveals that glioma-derived S100A9 can induce microglial M2 polarization, inhibit CD8+ T lymphocytes, and promote immunosuppression. The mechanism is related to the interaction with alpha v133 integrin and subsequent activation of AKT1 in microglia. The expression of S100A9 is positively associated with CD206 expression and negatively correlated with CD8+ T lymphocyte accumulation in the TME, suggesting a potential role of S100A9 in regulating the tumor microenvironment and immune evasion in glioma.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2024)

Article Biochemistry & Molecular Biology

Inhibition of autophagy initiation: A novel strategy for oral squamous cell carcinomas

Yomna S. Abd El-Aziz, Matthew J. McKay, Mark P. Molloy, Betty McDowell, Elizabeth Moon, Loretta Sioson, Amy Sheen, Angela Chou, Anthony J. Gill, Patric J. Jansson, Sumit Sahni

Summary: This study identified a novel combination of autophagy inhibitors that can effectively inhibit the proliferation of oral squamous cell carcinoma (OSCC) cells, including both chemosensitive and chemoresistant cells. This research is important for the development of new therapies for advanced OSCC tumors.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2024)

Article Biochemistry & Molecular Biology

Paxillin/HDAC6 regulates microtubule acetylation to promote directional migration of keratinocytes driven by electric fields

Luojia Liu, Xiaoqiang Liu, Ying Chen, Meng Kong, Jinghong Zhang, Min Jiang, Hongling Zhou, Jinrui Yang, Xu Chen, Ze Zhang, Chao Wu, Xupin Jiang, Jiaping Zhang

Summary: Our study revealed that the Paxillin/HDAC6 signaling pathway regulates microtubule acetylation in electric field-guided keratinocyte migration.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2024)

Article Biochemistry & Molecular Biology

The bacterial magnesium transporter MgtA reveals highly selective interaction with specific cardiolipin species

Julia Weikum, Jeroen F. van Dyck, Saranya Subramani, David P. Klebl, Merete Storflor, Stephen P. Muench, Soren Abel, Frank Sobott, J. Preben Morth

Summary: The study reveals the complex interaction between bacterial magnesium transporter A (MgtA) and cardiolipin 18:1 and cardiolipin 16:0, highlighting the importance of lipid environment in protein activity and stability. Further understanding of Mg2+ homeostasis in bacteria will provide insights into bacterial infections.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2024)

Article Biochemistry & Molecular Biology

Lanosterol elevates cytoprotective response through induced-proteasomal degradation of aberrant proteins

Sumit Kinger, Yuvraj Anandrao Jagtap, Ankur Rakesh Dubey, Prashant Kumar, Akash Choudhary, Rohan Dhiman, Vijay Kumar Prajapati, Deepak Chitkara, Krishna Mohan Poluri, Amit Mishra

Summary: Efficient protein synthesis and quality control mechanisms are crucial for maintaining proteostasis and preventing neurodegeneration. This study demonstrates that treating cells with Lanosterol can enhance the proteolytic activity of Proteasome and promote the removal of misfolded proteins, suggesting a potential therapeutic approach for abnormal protein accumulation.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2024)

Article Biochemistry & Molecular Biology

Disorders in the CMG helicase complex increase the proliferative capacity and delay chronological aging of budding yeast

Karolina Stepien, Adrianna Skoneczna, Monika Kula-Maximenko, Lukasz Jurczyk, Mateusz Molon

Summary: The replication of DNA requires a complex machinery called the replisome, which is highly conserved across species. One crucial component of the replisome is the CMG helicase complex, which unwinds DNA and coordinates the assembly and function of other replisome components. In this study, the impact of the absence of one copy of the CMG complex genes on the physiology and aging of yeast cells was investigated. The findings showed disruptions in the cell cycle, extended doubling times, and alterations in the biochemical profile of these cells. Importantly, it was found that heterozygous cells for CMG helicase genes exhibited increased reproductive potential and delayed aging. The study also highlighted potential therapeutic targets for cancer treatment using yeast.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2024)

Article Biochemistry & Molecular Biology

Replacement of Lys27 by asparagine in the SERCA regulator myoregulin: A Ca2+affinity modulator or a catalytic activity switch?

Nishadh Rathod, Guadalupe Guerrero-Serna, Howard S. Young, L. Michel Espinoza-Fonseca

Summary: This study reveals that replacing Lys27 with Asn enhances the inhibitory potency of MLN without affecting SERCA's affinity for Ca2+. The findings suggest that the SERCA site modulating Ca2+ affinity also functions as a catalytic activity switch.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2024)

Article Biochemistry & Molecular Biology

Interplay between SUMO1-related SUMOylation and phosphorylation of p65 promotes hepatocellular carcinoma progression

Can Jiang, Chunyang Zhang, Min Dai, Fuyan Wang, Sa Xu, Dan Han, Yanyan Wang, Yajie Cao, Yanyan Liang, Ziyu Zhang, Lina Yan, Yujun Shen, Kewu He, Yuxian Shen, Jun Liu

Summary: The phosphorylation of p65 and the expression of SUMO1 are increased in cancer tissues of HCC patients, and there is a positive correlation between SUMO1 and phosphorylated p65. SUMOylation of p65 by SUMO1 promotes p65 nuclear import and enhances NF-xB activity. Both SUMOylation and phosphorylation of p65 increase the viability and invasion of hepatoma cells, and decrease cell apoptosis.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2024)

Article Biochemistry & Molecular Biology

Protein tyrosine phosphatase 1B is a regulator of alpha-actinin4 in the glomerular podocyte

Ming-Fo Hsu, Yoshihiro Ito, Jai Prakash Singh, Shu-Fang Hsu, Alan Wells, Kuang-Yu Jen, Tzu-Ching Meng, Fawaz G. Haj

Summary: This study identified alpha-actinin4 as a novel substrate of PTP1B in podocytes and demonstrated their interaction in regulating podocyte function. Targeting PTP1B and alpha-actinin4 could be a potential therapeutic approach for podocyte injury.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2024)

Article Biochemistry & Molecular Biology

Opposite regulation of glycogen metabolism by cAMP produced in the cytosol and at the plasma membrane

Paulo F. V. Bizerra, Eduardo H. Gilglioni, Hang Lam Li, Simei Go, Ronald P. J. Oude Elferink, Arthur J. Verhoeven, Jung -Chin Chang

Summary: This study investigates the role of cyclic AMP (cAMP) in glycogen metabolism and reveals that cAMP regulates glycogenolysis in opposite directions depending on its site of synthesis within cells and downstream effectors. The canonical tmAC-cAMP-PKA signaling promotes glycogenolysis, while the non-canonical sAC-cAMP-Epac1 signaling suppresses glycogenolysis. This highlights the importance of cAMP microdomain organization for distinct metabolic regulation.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2024)