Article
Biotechnology & Applied Microbiology
Fang Guo, Mengying Wang, Mi Huang, Yin Jiang, Qun Gao, Dekang Zhu, Mingshu Wang, Renyong Jia, Shun Chen, Xinxin Zhao, Qiao Yang, Ying Wu, Shaqiu Zhang, Juan Huang, Bin Tian, Xumin Ou, Sai Mao, Di Sun, Anchun Cheng, Mafeng Liu
Summary: Manganese is essential for bacterial protein function, but excess manganese can be toxic. This study identified two manganese exporters, MetA and MetB, in Riemerella anatipestifer CH-1. These findings are important for expanding our understanding of manganese transporters and revealing the mechanism of manganese toxicity.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
(2023)
Article
Biochemical Research Methods
Francisco Javier Albicoro, Carolina Vacca, Juan Hilario Cafiero, Walter Omar Draghi, Maria Carla Martini, Mark Goulian, Antonio Lagares, Maria Florencia Del Papa
Summary: To adapt to different environmental conditions, Sinorhizobium meliloti relies on finely tuned regulatory networks, most of which are unexplored to date. Deletion of the two-component system ActJK in S. meliloti negatively affects acid tolerance, bacteroid development, nodule occupancy, and the expression of genes involved in exopolysaccharide synthesis and efflux pumps. The study provides insights into the adaptation of rhizobia to acid stress and highlights the importance of ActJK in regulating key components associated with acid tolerance.
JOURNAL OF PROTEOME RESEARCH
(2023)
Article
Plant Sciences
A. F. M. Mohabubul Haque, Md Atikur Rahman, Urmi Das, Md Mostafizur Rahman, Mona M. Elseehy, Ahmed M. El-Shehawi, Md Sarwar Parvez, Ahmad Humayan Kabir
Summary: Members of MTP family in soybean play a role in metal ion transport and their expression is altered in response to iron deficiency and excess. Fe deficiency and Fe toxicity negatively affect plant growth, chlorophyll content, photosynthetic efficiency, and biomass. The concentrations of Fe and S in root and shoot, as well as root FCR activity and Zn levels, are regulated by differential Fe availability. Several MTP genes are differentially expressed under Fe shortage and Fe toxicity, indicating their potential role in metal tolerance. Bioinformatics analysis showed a close relationship between soybean MTP genes and Arabidopsis genes involved in solute transport and metal sequestration. These findings provide insights into Fe homeostasis mechanisms in soybean and their application in regulating Fe uptake.
PLANT PHYSIOLOGY AND BIOCHEMISTRY
(2022)
Article
Biochemistry & Molecular Biology
Chihiro Aikawa, Akihide Shimizu, Makoto Nakakido, Kazunori Murase, Takashi Nozawa, Kouhei Tsumoto, Ichiro Nakagawa
Summary: Cation diffusion facilitators (CDFs) are important metal transporters that play roles in intracellular metal homeostasis and toxicity. In Streptococcus pyogenes, MntE and CzcD are two CDF efflux transporters that selectively transport Mn and Zn. MntE and CzcD deficient strains showed decreased viability in macrophage-differentiated THP-1 cells and neutrophils, and increased viability in infected mice. Additionally, the absence of MntE and CzcD affected the maturation and proteolytic activity of SpeB, an important virulence factor in GAS. These findings provide new insights into pathogenicity mechanisms and metal resistance in bacterial pathogens.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2023)
Article
Microbiology
Annie Ouyang, Kendall M. Gasner, Stephanie L. Neville, Christopher A. McDevitt, Elaine R. Frawley
Summary: The divalent transition metal cation manganese is important for protein function, but can be toxic in excess. Two transporters, mntP and yiiP, were found to contribute to manganese efflux in Salmonella enterica serovar Typhimurium, providing new insights into metal transport in bacteria.
MICROBIOLOGY SPECTRUM
(2022)
Article
Microbiology
Agnese Bellabarba, Giovanni Bacci, Francesca Decorosi, Erki Aun, Elisa Azzarello, Maido Remm, Luciana Giovannetti, Carlo Viti, Alessio Mengoni, Francesco Pini
Summary: The association between leguminous plants and symbiotic nitrogen-fixing rhizobia showcases mutualism between eukaryotic hosts and prokaryotic microbes. While this symbiosis is somewhat species-specific, different rhizobial strains can co-colonize the same nodule. Through a bacterial genome-wide association (GWAS) analysis, the study identified genomic determinants related to competitive capabilities in Sinorhizobium meliloti strains.
Article
Microbiology
Maria Jose Soto, Juana Perez, Jose Munoz-Dorado, Francisco Javier Contreras-Moreno, Aurelio Moraleda-Munoz
Summary: Bacterial predation has both positive and negative effects on microbial community structures, plant and animal health, and environmental sustainability. A study on the interaction between Myxococcus xanthus and Sinorhizobium meliloti reveals that the predator induces significant transcriptional changes in the prey, leading to up-regulation of processes such as protein synthesis, energy generation, and fatty acid synthesis, as well as down-regulation of genes involved in fatty acid degradation and carbohydrate metabolism. The induction of various defense mechanisms, including changes in cell envelop composition and iron-uptake machinery, reflects the adaptations made by the prey to protect itself from the predatory attack.
FRONTIERS IN MICROBIOLOGY
(2023)
Article
Microbiology
Quentin Nicoud, Quentin Barriere, Nicolas Busset, Sara Dendene, Dmitrii Travin, Mickael Bourge, Romain Le Bars, Claire Boulogne, Marie Lecroel, Sandor Jenei, Atilla Kereszt, Eva Kondorosi, Emanuele G. Biondi, Tatiana Timchenko, Benoit Alunni, Peter Mergaert
Summary: Various functions in Sinorhizobium meliloti are involved in protecting endosymbionts, including peptide transporters, bacterial envelope structures, and stress response regulators.
Article
Microbiology
Damien M. R. Rivers, Derek D. Kim, Ivan J. Oresnik
Summary: This study demonstrates that Rhizobium leguminosarum strains unable to utilize rhamnose as a sole carbon source are less competitive for nodule occupancy. Through a series of experiments and analyses, the researchers show that the regulator RhaR in Sinorhizobium meliloti is dominant to its counterpart in R. leguminosarum, and that rhamnose catabolism is a general determinant in competition for nodule occupancy among rhizobial species.
Article
Biochemistry & Molecular Biology
Marie Pacoud, Karine Mandon, Julie Cazareth, Olivier Pierre, Pierre Frendo, Genevieve Alloing
Summary: Reactive oxygen species, such as hydrogen peroxide, play a crucial role in controlling the establishment and functioning of Rhizobium-legume symbiosis. This study used biosensors to measure the intracellular redox state of Sinorhizobium meliloti, a bacterium involved in nitrogen-fixing symbiosis. The results revealed an oxidative shift in the redox status of S. meliloti during bacteroid differentiation. These findings provide new opportunities for studying redox dynamics during N2-fixing symbiosis.
FREE RADICAL BIOLOGY AND MEDICINE
(2022)
Article
Biochemistry & Molecular Biology
Martina Slapakova, Domenico Sgambati, Luciano Pirone, Veronica Russo, Gianluca D'Abrosca, Mariangela Valletta, Rosita Russo, Angela Chambery, Gaetano Malgieri, Emilia Maria Pedone, Remus Thei Dame, Paolo Vincenzo Pedone, Ilaria Baglivo
Summary: Proteins of the MucR/Ros family play a crucial role in bacterial infection or symbiosis with eukaryotic hosts. In this study, MucR isolated from Sinorhizobium meliloti was characterized for the first time, showing its ability to bind DNA and recognize specific sequences. The research identified MucR from Sinorhizobium meliloti as a member of a new family of Histone-like Nucleoid Structuring (H-NS) proteins, explaining its multifaceted role in many species of alpha-proteobacteria.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)
Article
Biochemical Research Methods
Guangqing Liu, Huiying Wang, Baisong Tong, Yali Cui, Sibylle C. Vonesch, Huina Dong, Dawei Zhang
Summary: Researchers have developed a CRISPR/Cas12e-based genome engineering toolkit that allows precise and traceless genetic engineering in the bacterium Sinorhizobium meliloti 320 (SM320). By optimizing the promoter and using a low copy plasmid, the expression level of CRISPR/Cas12e was adjusted to the low homologous recombination efficiency of SM320, resulting in improved transformation and precision editing efficiencies. Additionally, the accuracy of CRISPR/Cas12eGET was enhanced by deleting the ku gene involved in NHEJ repair in SM320. This advancement will benefit metabolic engineering and basic research on SM320, and provide a platform for developing the CRISPR/Cas system in strains with low homologous recombination efficiency.
ACS SYNTHETIC BIOLOGY
(2023)
Article
Plant Sciences
Xinchen Jiang, Junliang Yin, Lixin Wang, Keyong Xi, Xiongmeng Zhu, Gang Li, Yongxing Zhu, Yiqing Liu
Summary: Metal-tolerance proteins (MTPs) play crucial roles in plant metal tolerance and ion homeostasis. In this study, 142 MTPs were identified from 11 genomes of 8 Cucurbitaceae species, showing that they are mainly plasma membrane-located proteins with duplication events. Expression profiling revealed that several MTP genes are constitutively expressed in Cucurbitaceae species and their expression levels are not significantly altered by various stresses.
Article
Microbiology
Longxiang Wang, Yuan Xiao, Xiaowei Wei, Jimin Pan, Deqiang Duanmu
Summary: This study reports the development of precise gene modification tools using the CRISPR/Cas9 system and various deaminases for rhizobia, including an adenine base editor system, a cytidine base editor, and a guanine base editor. These tools can accelerate functional genomics research and genome manipulation of rhizobia.
FRONTIERS IN MICROBIOLOGY
(2021)
Article
Microbiology
Robin Klein, Jannis Brehm, Juliane Wissig, Ralf Heermann, Gottfried Unden
Summary: This study identified the CRP-like transcriptional regulator Clr and the TetR-like regulator CycR as interacting proteins with the membrane-bound AC CyaC in Sinorhizobium meliloti. The interactions of CycR with Clr and CyaC with Clr are dependent on the presence of cAMP and ATP, respectively, while the interaction of CyaC with CycR is independent of nucleotides.
Article
Immunology
Agostina Salusso, Daniel Raimunda
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY
(2017)
Article
Biochemistry & Molecular Biology
Daniel Raimunda, Poorna Subramanian, Timothy Stemmler, Jose M. Argueello
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2012)
Article
Biochemistry & Molecular Biology
Daniel Raimunda, Manuel Gonzalez-Guerrero, Blaise W. Leeber, Jose M. Argueello
Article
Immunology
Charles V. Rosadini, Jeffrey D. Gawronski, Daniel Raimunda, Jose M. Argueello, Brian J. Akerley
INFECTION AND IMMUNITY
(2011)
Review
Biochemistry & Molecular Biology
Jose M. Argueello, Daniel Raimunda, Manuel Gonzalez-Guerrero
JOURNAL OF BIOLOGICAL CHEMISTRY
(2012)
Article
Biochemistry & Molecular Biology
Teresita Padilla-Benavides, Jarukit E. Long, Daniel Raimunda, Christopher M. Sassetti, Jose M. Argueello
JOURNAL OF BIOLOGICAL CHEMISTRY
(2013)
Article
Biochemistry & Molecular Biology
Daniel Raimunda, Tripti Khare, Carol Giometti, Stefan Vogt, Jose M. Argueello, Lydia Finney
Article
Biochemistry & Molecular Biology
Daniel Raimunda, Teresita Padilla-Benavides, Stefan Vogt, Sylvain Boutigny, Kaleigh N. Tomkinson, Lydia A. Finney, Jose M. Argueello
Article
Biochemistry & Molecular Biology
Daniel Raimunda, Jarukit E. Long, Christopher M. Sassetti, Jose M. Argueello
MOLECULAR MICROBIOLOGY
(2012)
Article
Biochemistry & Molecular Biology
Daniel Raimunda, Jarukit E. Long, Teresita Padilla-Benavides, Christopher M. Sassetti, Jose M. Argueello
MOLECULAR MICROBIOLOGY
(2014)
Review
Immunology
Jose M. Argueello, Daniel Raimunda, Teresita Padilla-Benavides
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY
(2013)
Article
Biotechnology & Applied Microbiology
Paula Mihelj, Isidro Abreu, Tomas Moreyra, Manuel Gonzalez-Guerrero, Daniel Raimunda
Summary: Cross-talk between iron and cobalt has long been recognized in biological systems, as cobalt has the ability to interfere with proper iron utilization. This study reveals how the rhizobia cells solve the disturbance caused by Co2+ toxicity by clearing Fe through a Co2+ exporter, in order to reestablish intracellular Fe levels by importing nonfree Fe, heme. This piggyback-ride type of transport may aid bacterial cells to survive in free-living conditions where high levels of Co2+ may be encountered.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
(2023)
Article
Biochemistry & Molecular Biology
Carolina Morales, Macarena Fernandez, Rodrigo Ferrer, Daniel Raimunda, Dolores C. Carrer, Mariana Bollo
Summary: The Unfolded protein response (UPR), triggered by stress in the endoplasmic reticulum (ER), contributes to neurodegenerative diseases. In this study, it was found that ursodeoxycholic acid (UDCA) significantly reduced neurite atrophy and decreased pro-apoptotic signaling in GM2 gangliosidosis. The results suggest a direct interaction between UDCA and the cytosolic domain of PERK.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)
Review
Biochemistry & Molecular Biology
Isidro Abreu, Paula Mihelj, Daniel Raimunda
Article
Biochemistry & Molecular Biology
Philipp Grad, Katarina Edwards, Lars Gedda, Victor Agmo Hernandez
Summary: This study investigates the effects of polyethylene glycol-(PEG) modified lipids and gangliosides on the Ca2+ induced interaction between liposomes composed of palmitoyl-oleoyl phosphatidylethanolamine (POPE) and palmitoyl-oleoyl phosphatidylserine (POPS) at physiological ionic strength. The results show that naked liposomes tend to adhere, rupture, and collapse on each other's surfaces upon addition of Ca2+, eventually resulting in the formation of large multilamellar aggregates and bilayer sheets. However, the presence of gangliosides or PEGylated lipids leads to the formation of small, long-lived bilayer fragments/disks. PEGylated lipids seem to be more effective than gangliosides at stabilizing these structures. The study suggests that direct liposome-liposome fusion is not the dominating process triggered by Ca2+ in the systems studied.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Saurabh Saraswat, Archana Chugh
Summary: Cell penetrating peptides (CPP) are important tools for intracellular delivery of molecules. In this study, a novel marine-derived CPP from Engraulis japonicus, called Engraulisin, was reported. Engraulisin demonstrated successful cellular uptake and selective antimicrobial activity against Methicillin-resistant Staphylococcus aureus (MRSA), making it a potential candidate for drug delivery.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Emanuela Efodili, Ashlynn Knight, Maryem Mirza, Cedric Briones, Il-Hyung Lee
Summary: This study demonstrates the spontaneous transfer of small membrane-bound peptides between a supported lipid bilayer and giant unilamellar vesicles in vitro. The transfer occurs through the formation of hemi-fusion stalks and is limited to small peptides due to the highly curved structure of the stalk. This system provides a synthetic platform for studying peptide trafficking between synthetic membranes.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Yueqi Niu, Si Jia Chen, Jeffery B. Klauda
Summary: Macrophage membranes in the activated state are more tightly packed, exhibit increased chain order across lipid species, and form specific lipid clusters. These findings provide physiologically accurate models for future computational studies of macrophage membranes and their proteins.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Niki Baccile, Vincent Chaleix, Ingo Hoffmann
Summary: This study measured the bending rigidity of self-assembled structures formed by a new biobased glucolipid bioamphiphile using neutron spin-echo (NSE) technology. The results showed that the bending rigidity of these structures is lower or higher compared to phospholipid membranes, providing a new theoretical basis for the application of these new molecular systems.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Alain Bolano Alvares, Pablo E. A. Rodriguez, Gerardo D. Fidelio
Summary: The behavior of amphiphilic molecules at the air/water interface was studied to evaluate the arrangement formed in a confined area. The surface properties of zwitterionic DPPC lipid and A beta(1-40) amyloid peptide in mixed films were investigated at different temperatures. DPPC undergoes a phase transition depending on temperature and lateral pressure, which allows for the study of its influence on amyloid structure formation.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Lukasz Plachta, Marzena Mach, Magdalena Kowalska, Pawel Wydro
Summary: Resveratrol, a popular phytoalexin found in grapes and red wine, has beneficial effects on the cardiovascular system, exhibits antiviral, antibacterial, and antifungal properties, and may have therapeutic effects against cancer. This study investigates the interaction of resveratrol with model cell membranes, demonstrating changes in their physicochemical parameters and highlighting the role of cholesterol content in resveratrol incorporation. The findings suggest that the molecular mechanism of action of resveratrol may involve interactions with lipid rafts.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Edurne Rujas, Beatriz Apellaniz, Johana Torralba, David Andreu, Jose M. M. Caaveiro, Shixia Wang, Shan Lu, Jose L. Nieva
Summary: This study investigates the role of fusion peptide and Trp-rich membrane proximal external region in HIV-1 fusion and demonstrates that liposome-based formulations containing FP-MPER hybrid peptides can induce the production of specific neutralizing antibodies in rabbits. The results support the use of liposomes as vaccine carriers and the inclusion of lipid membranes in immunogens to elicit specific humoral responses.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Dailin Li, Dingyuan Shi, Lei Wang
Summary: G protein-gated inwardly rectifying potassium (GIRK) channels play a significant role in regulating cell excitability. This study investigated the ion permeation mechanism in GIRK2 mutants using molecular dynamic simulations and QM/MM methods. The results revealed the importance of a multi-ion distribution for ion conduction.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Max J. den Uijl, Arnold J. M. Driessen
Summary: Membrane protein insertion into and translocation across the bacterial cytoplasmic membrane are essential processes facilitated by the Sec translocon. The phospholipid dependence of membrane protein insertion has remained mostly unknown. This study reveals that the insertion of the mannitol permease MtlA into the membrane depends on the presence of phosphatidylglycerol and is stimulated by phosphatidylethanolamine.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Patrick Allen, Adam C. Smith, Vernon Benedicto, Abbas Abdulhasan, Vasanthy Narayanaswami, Enrico Tapavicza
Summary: We explore the stability, size, and structure of nanodiscs formed by the N-terminal domain of apolipoprotein E3 and a variable number of 1,2-dimyristoyl-sn-glycero-3-phosphocholine molecules. Our simulations suggest that nanodiscs containing 240 to 420 DMPC molecules are stable. The antiparallel configuration shows more protein-protein interactions and ionic contacts, as well as greater stability and rigidity compared to the parallel configuration.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Patrick M. Keating, Nicholas P. Schifano, Xinrui Wei, Matthew Y. Kong, Jinwoo Lee
Summary: Lassa virus (LASV) infection is dependent on the fusion of its viral membrane with the host cell membrane, and our study reveals that this fusion process involves pH-dependent conformational changes in the transmembrane domain of LASV. These findings provide valuable insights into the fusion mechanism of LASV and can be utilized in the design of therapeutics to combat Lassa virus infections and prevent its potential spread.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Ashley L. Bennett, Kristen N. Cranford, Austin L. Bates, Christopher R. Sabatini, Hee-Seung Lee
Summary: This study employed molecular dynamics simulations to elucidate the binding, folding, and insertion details of TP10W in the cell membrane. The simulations revealed that TP10W can translocate across the lipid membrane as a monomer, and the charged amino acid side chains can move between lipid leaflets. Comparison with point mutated variants demonstrated significant conformational changes due to charge distribution.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Jessica H. van Wonderen, Jason C. Crack, Marcus J. Edwards, Thomas A. Clarke, Gerhard Saalbach, Carlo Martins, Julea N. Butt
Summary: Electrogenic bacteria transfer excess respiratory electrons to metal oxide particles and electrodes through the MtrCAB complex. The crystal structure of MtrCAB from S. baltica OS185 was resolved, and liquid chromatography mass spectrometry was used to determine the mass values of the three proteins in purified MtrCAB complexes.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Review
Biochemistry & Molecular Biology
Yi-Ming Chen, Ching-Tai Lu, Chia-Wen Wang, Wolfgang B. Fischer
Summary: A series of dye ligands were ranked based on docking experiments, selecting the most suitable ligands for binding with different proteins. Additionally, a comparison study was conducted on a series of repurposing drugs and known antivirals.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)