Article
Biology
Juliane John, Oskar Aurelius, Vivek Srinivas, Patricia Saura, In-Sik Kim, Asmit Bhowmick, Philipp S. Simon, Medhanjali Dasgupta, Cindy Pham, Sheraz Gul, Kyle D. Sutherlin, Pierre Aller, Agata Butryn, Allen M. Orville, Mun Hon Cheah, Shigeki Owada, Kensuke Tono, Franklin D. Fuller, Alexander Batyuk, Aaron S. Brewster, Nicholas K. Sauter, Vittal K. Yachandra, Junko Yano, Ville Ri Kaila, Jan Kern, Hugo Lebrette, Martin Hogbom
Summary: Redox reactions play a central role in biochemistry and are controlled by protein structural changes. In this study, the authors utilized femtosecond crystallography to examine the structural rearrangements and crosstalk within the Bacillus cereus ribonucleotide reductase R2b-NrdI complex. They found that the flavin in the complex is under steric strain, which likely affects its redox properties and promotes superoxide generation. The redox state of the flavin also controls a binding site that is linked to the channel responsible for transporting superoxide species. These findings have important implications for understanding the control of reactive oxygen species and radical generation in protein R2b.
Review
Biochemistry & Molecular Biology
Jagoda Jablonska, Dan S. Tawfik
Summary: Molecular oxygen has had a significant impact on metabolism and evolutionary innovation, with the majority of oxygen-dependent enzymatic reactions emerging after its appearance in the biosphere around 3 billion years ago. This article focuses on the transitions of enzyme classes and non-enzymatic proteins, exploring their catalytic chemistry, metabolism, and protein structure. It suggests that engineering enzymes to utilize the reactivity of oxygen may enhance catabolic power and versatility.
Review
Biochemistry & Molecular Biology
Elena Rosini, Loredano Pollegioni
Summary: Oxidases, specifically FAD-containing enzymes such as glucose oxidase, have shown promise in cancer therapy by producing reactive oxygen species in tumors and potentially modulating cytotoxic compound production. Advances in nanotechnologies and protein engineering have improved tumor specificity, making oxidase-based ROS production a mature and applicable approach in clinical settings.
Editorial Material
Physics, Multidisciplinary
Eite Tiesinga, Peter Mohr
Summary: This article introduces a task group that recommends values for constants in fundamental theories of physics and chemistry. Eite Tiesinga and Peter Mohr share some of the stories behind these constants.
Article
Engineering, Environmental
Chao Li, Qingyang Li, Yuchen Jiang, Yuewen Shao, Guoming Gao, Shu Zhang, Jun Xiang, Song Hu, Yi Wang, Xun Hu
Summary: The introduction of O2 pre-oxidation enhanced the porosity generation and mass yield of activated carbon, as well as improving the reactivity of the activated carbon.
CHEMICAL ENGINEERING JOURNAL
(2023)
Article
Biochemistry & Molecular Biology
Mozart S. Pereira, Simara S. de Araújo, Ronaldo A. P. Nagem, John P. Richard, Tiago A. S. Brandao
Summary: The activity of salicylate hydroxylase is influenced by different components of its coenzyme FAD, with AMP and ribitol phosphate playing an important role in anchoring the flavin and directing hydroxylation reactions.
BIOORGANIC CHEMISTRY
(2022)
Review
Clinical Neurology
James R. Lackner
Summary: This paper explores the phenomenon of losing spatial orientation in weightless conditions with eyes closed and how a light touch of the hand can restore it. It also investigates how touch of the hand can stabilize postural control on Earth even in individuals lacking vestibular function. Furthermore, the study reveals that the direction of gravity, rather than the direction of balance, influences the perceived upright position.
FRONTIERS IN NEUROLOGY
(2021)
Article
Chemistry, Multidisciplinary
Alejandro Gran-Scheuch, Loreto Parra, Marco W. Fraaije
Summary: Flavin as a cofactor is involved in various biochemical reactions, and its unique ability to react with molecular oxygen in its reduced form sets it apart from other metal free cofactors. This study investigated the formation of reactive oxygen species (ROS) by several flavoprotein oxidases and monooxygenases, and found that significant amounts of superoxide were produced by all enzymes, while hydrogen peroxide levels were relatively low.
ACS SUSTAINABLE CHEMISTRY & ENGINEERING
(2023)
Article
Chemistry, Multidisciplinary
Yu-Fan Wang, Ming-Tian Zhang
Summary: This study reports that the interaction between electron donor and proton donor can overcome the barrier of direct O2 activation via a concerted electron-proton transfer mechanism, providing a new strategy for developing direct PCET activation of nonpolar bonds.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
(2022)
Editorial Material
Education, Scientific Disciplines
Sami El-Dalati, Daniel Cronin
Summary: Attempting to drive change in modern medicine can be overwhelming for trainees and junior faculty, who often lack resources and credibility. The authors' experience in reforming endocarditis patient management highlights the important role residents can play in medical practice transformation.
Editorial Material
Oncology
Alexia-Ileana Zaromytidou
Summary: Lisa M. Coussens is a prominent cancer biologist in Portland, Oregon, and currently serves as the President of AACR. In a recent interview, she shared her insights on the past year and her outlook for the future.
Article
Biochemistry & Molecular Biology
Ginga Shimakawa, Ayaka Kohara, Chikahiro Miyake
Summary: Light-enhanced respiration (LER) occurs in both eukaryotic algae and photosynthetic prokaryote cyanobacteria, with similar physiological characteristics. However, LER in cyanobacteria is uncoupled from photosynthetic electron transport. It is primarily driven by substrates produced during photosynthetic CO2 assimilation and has significant physiological implications.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Engineering, Biomedical
Jiadong Pang, Daqian Zhu, Yang Liu, Dingxin Liu, Chunhua Zhao, Jianeng Zhang, Shengping Li, Zexian Liu, Xiaobing Li, Peng Huang, Shijun Wen, Jiang Yang
Summary: Diversified cyclodiaryliodonium (CDAI) NADPH oxidase (NOX) inhibitors were designed with optimal growth inhibition and CD44-targeted delivery using synthesized sulfated glycosaminoglycan derivatives. Self-assembled nanoparticle-drug conjugate (NDC) enabled controlled release and cellular trafficking. NOX inhibition reprograms metabolic phenotype and elevates cytotoxic ROS through mitochondrial membrane depolarization.
ADVANCED HEALTHCARE MATERIALS
(2023)
Review
Biochemistry & Molecular Biology
Tullia Maraldi, Cristina Angeloni, Cecilia Prata, Silvana Hrelia
Summary: This review highlights the role of NOX-derived ROS in stem cell biology and functions, focusing on the positive and negative effects triggered by the activity of different NOX isoforms. Recent findings on downstream molecular targets of NOX-ROS signaling that can modulate stem cell homeostasis and lineage commitment are discussed, along with implications in ex vivo expansion and in vivo engraftment, function, and longevity. The pivotal role of NOX as a regulator of several stem cell populations is underscored, and further studies on the effects of pharmacological modulation of NOX in human stem cells are deemed imperative.
Article
Genetics & Heredity
Elspeth A. Bruford, Bryony Braschi, Liora Haim-Vilmovsky, Tamsin E. M. Jones, Ruth L. Seal, Susan Tweedie
Summary: This article discusses the significance of the HUGO Gene Nomenclature Committee (HGNC) in standardizing human gene names and facilitating scientific communication. It highlights the challenges in obtaining financial support for critical biomedical resources like HGNC as funding priorities change.
Article
Biochemistry & Molecular Biology
Giovanni Gadda, Pablo Sobrado
Article
Biochemistry & Molecular Biology
Juan Carro, Patricia Ferreira, Angel T. Martinez, Giovanni Gadda
Article
Biochemistry & Molecular Biology
Elias Flores, Giovanni Gadda
Article
Biochemistry & Molecular Biology
Jacob Ball, Renata A. G. Reis, Johnson Agniswamy, Irene T. Weber, Giovanni Gadda
Article
Biochemistry & Molecular Biology
Dan Su, Mohammad Pabel Kabir, Yoelvis Orozco-Gonzalez, Samer Gozem, Giovanni Gadda
Article
Biochemistry & Molecular Biology
Renata A. G. Reis, Francesca Salvi, Isabella Williams, Giovanni Gadda
Article
Chemistry, Physical
Dan Su, Crystal Smitherman, Giovanni Gadda
JOURNAL OF PHYSICAL CHEMISTRY B
(2020)
Article
Biochemistry & Molecular Biology
Maria Vodovoz, Giovanni Gadda
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS
(2020)
Article
Biochemistry & Molecular Biology
Joanna A. Quaye, Giovanni Gadda
Article
Chemistry, Physical
Benjamin D. Dratch, Yoelvis Orozco-Gonzalez, Giovanni Gadda, Samer Gozem
Summary: This study found that deprotonating the active site significantly alters the flavin absorption spectrum, but accurate prediction can only be achieved by considering the influence of solution ions on the protein environment.
JOURNAL OF PHYSICAL CHEMISTRY LETTERS
(2021)
Article
Biochemistry & Molecular Biology
Archana Iyer, Renata A. G. Reis, Johnson Agniswamy, Irene T. Weber, Giovanni Gadda
Summary: The crystal structure of D-arginine dehydrogenase from Pseudomonas aeruginosa has been determined, revealing the versatility of the reduced flavin in performing multiple functions at the same active site.
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS
(2022)
Article
Biochemistry & Molecular Biology
Joanna A. Quaye, Jacob Ball, Giovanni Gadda
Summary: NAD(P)H: quinone oxidoreductases (NQOs) play a crucial role in detoxifying quinones as antioxidants in both Prokaryotes and Eukaryotes. This study investigates the kinetics of NQO from Pseudomonas aeruginosa PAO1 in the reduction of benzoquinone and juglone. The results suggest that flavin reduction is the rate-limiting step for overall turnover, and the hydride transfer from NADH to FMN and quinol product release partially limit the turnover. Furthermore, the study demonstrates how the properties of quinol substrates can affect the equilibrium of NQO esomerization.
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS
(2022)
Article
Biochemistry & Molecular Biology
Daniel Ouedraogo, Michael Souffrant, Xin-Qiu Yao, Donald Hamelberg, Giovanni Gadda
Summary: Numerous studies have shown that enzymes have multiple conformational changes during catalysis. In this study, the effect of a mutation (I335H) on the catalytic function of PaDADH was investigated using molecular dynamics and biochemical techniques. The results revealed that the mutation led to a more closed conformation in PaDADH.
Article
Chemistry, Physical
Mohammad Pabel Kabir, Daniel Ouedraogo, Yoelvis Orozco-Gonzalez, Giovanni Gadda, Samer Gozem
Summary: To expand the application range of FbFPs, researchers explored different strategies to modify the absorption and emission wavelengths. By placing positively charged amino acids near the flavin cofactor, previous studies achieved spectral tuning. In this work, the researchers proposed an alternative strategy by placing negatively charged amino acids near the flavin's N1 atom. Computational predictions and experimental results confirmed that this strategy resulted in a slight red shift in the fluorescence of the mutant protein iLOV-Q430E, indicating its potential for further red shifting.
JOURNAL OF PHYSICAL CHEMISTRY B
(2023)
Article
Agriculture, Multidisciplinary
Joanna Afokai Quaye, Daniel Ouedraogo, Giovanni Gadda
Summary: The commercial food and l-amino acid industries use bioengineered d-amino acid oxidizing enzymes to detect and remove d-amino acid contaminants. This study successfully engineered a faster biocatalyst through mutation and kinetic methods, which has potential applications in industrial settings.
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
(2023)