Regulatory RNAs in archaea: first target identification in Methanoarchaea

Small RNAs for defence and regulation in archaea

(2012) Anita Marchfelder et al.   EXTREMOPHILES

Acting antisense: plasmid- and chromosome-encoded sRNAs from Gram-positive bacteria

(2012) Sabine Brantl   Future Microbiology

Superfolder GFP reporters validate diverse new mRNA targets of the classic porin regulator, MicF RNA

(2012) Colin P. Corcoran et al.   MOLECULAR MICROBIOLOGY

An archaeal sRNA targeting cis - and trans -encoded mRNAs via two distinct domains

(2012) Dominik Jäger et al.   NUCLEIC ACIDS RESEARCH

Identification and Characterization of Small RNAs in the Hyperthermophilic Archaeon Sulfolobus solfataricus

(2012) Ning Xu et al.   PLoS One

Accessibility and conservation: General features of bacterial small RNA–mRNA interactions?

(2012) Andreas Richter et al.   RNA Biology

RNA processing in the minimal organism Nanoarchaeum equitans

(2012) Lennart Randau   GENOME BIOLOGY

Plant Small RNAs: Biogenesis, Mode of Action and Their Roles in Abiotic Stresses

(2012) Praveen Guleria et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Regulatory RNAs inHaloferax volcanii: Figure 1

(2011) Susan Fischer et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Identification of CRISPR and riboswitch related RNAs among novel noncoding RNAs of the euryarchaeon Pyrococcus abyssi

(2011) Kounthéa Phok et al.   BMC GENOMICS

Regulation by Small RNAs in Bacteria: Expanding Frontiers

(2011) Gisela Storz et al.   MOLECULAR CELL

sTarPicker: A Method for Efficient Prediction of Bacterial sRNA Targets Based on a Two-Step Model for Hybridization

(2011) Xiaomin Ying et al.   PLoS One

PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences

(2010) Stefan E. Seemann et al.   BIOINFORMATICS

Small RNAs in Haloarchaea: Identification, differential expression and biological function

(2010) Julia Straub et al.   RNA Biology

Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes

(2010) Zasha Weinberg et al.   GENOME BIOLOGY

Partition function and base pairing probabilities for RNA–RNA interaction prediction

(2009) Fenix W. D. Huang et al.   BIOINFORMATICS

A partition function algorithm for interacting nucleic acid strands

(2009) Hamidreza Chitsaz et al.   BIOINFORMATICS

Small regulatory non-coding RNAs in bacteria: physiology and mechanistic aspects

(2009) Francis Repoila et al.   BIOLOGY OF THE CELL

Regulatory RNAs in Bacteria

(2009) Lauren S. Waters et al.   CELL

Origins and Mechanisms of miRNAs and siRNAs

(2009) Richard W. Carthew et al.   CELL

Experimental approaches for the discovery and characterization of regulatory small RNA

(2009) Cynthia Mira Sharma et al.   CURRENT OPINION IN MICROBIOLOGY

Bacterial chromosome-encoded small regulatory RNAs

(2009) Sabine Brantl   Future Microbiology

A single-base resolution map of an archaeal transcriptome

(2009) O. Wurtzel et al.   GENOME RESEARCH

A 5' Leader Sequence Regulates Expression of Methanosarcinal CO Dehydrogenase/Acetyl Coenzyme A Synthase

(2009) K. L. Anderson et al.   JOURNAL OF BACTERIOLOGY

Physiology and Posttranscriptional Regulation of Methanol:Coenzyme M Methyltransferase Isozymes in Methanosarcina acetivorans C2A

(2009) R. B. Opulencia et al.   JOURNAL OF BACTERIOLOGY

In vivo expression and purification of aptamer-tagged small RNA regulators

(2009) Nelly Said et al.   NUCLEIC ACIDS RESEARCH

Regulation of Translation in Haloarchaea: 5′- and 3′-UTRs Are Essential and Have to Functionally Interact In Vivo

(2009) Mariam Brenneis et al.   PLoS One

Deep sequencing analysis of the Methanosarcina mazei Go1 transcriptome in response to nitrogen availability

(2009) D. Jager et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mapping the Burkholderia cenocepacia niche response via high-throughput sequencing

(2009) D. R. Yoder-Himes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Small RNA gene identification and mRNA target predictions in bacteria

(2008) C. Pichon et al.   BIOINFORMATICS

IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions

(2008) Anke Busch et al.   BIOINFORMATICS

RNAplex: a fast tool for RNA–RNA interaction search

(2008) Hakim Tafer et al.   BIOINFORMATICS

Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis

(2008) Christoph Jöchl et al.   NUCLEIC ACIDS RESEARCH

Deep Sequencing Analysis of Small Noncoding RNA and mRNA Targets of the Global Post-Transcriptional Regulator, Hfq

(2008) Alexandra Sittka et al.   PLoS Genetics