Article
Multidisciplinary Sciences
Xiaojuan Wang, Xiaoling Xu, Shaojun Zhang, Na Chen, Yunfeng Sun, Kuifen Ma, Dongsheng Hong, Lu Li, Yongzhong Du, Xiaoyang Lu, Saiping Jiang
Summary: The article describes the design of a nanorod drug delivery system that overcomes Klebsiella pneumonia resistance to tigecycline by increasing drug accumulation, inhibiting efflux pumps, and targeting bacteria, thus enhancing the drug's antibacterial activity.
NATURE COMMUNICATIONS
(2022)
Article
Biochemistry & Molecular Biology
Sheetal Sinha, Vidhya Bharathi Dhanabal, Paola Sperandeo, Alessandra Polissi, Surajit Bhattacharjya
Summary: Currently, the options for antibiotic treatment of infections caused by drug resistant Gram-negative pathogens are limited. Hence, researchers have explored the use of insect-derived antimicrobial peptide Thanatin as an effective antibiotic against Gram-negative bacteria. This study investigates the structure-activity correlation of Thanatin and its analogs, and identifies the M21F analog as having superior antibacterial activity and higher affinity binding to LPS and LptA(m) compared to Thanatin. The findings provide a framework for the rational design of potent antimicrobial peptides based on Thanatin for the treatment of drug resistant Gram-negative bacteria.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2022)
Article
Food Science & Technology
Hongyan Zhang, Sha Liu, Xindan Li, Wenjun Wang, Lili Deng, Kaifang Zeng
Summary: Research has shown that thanatin, P W1, and M-S can disrupt the hyphae of Geotrichum citri-aurantii, as well as inhibit its growth and synthesis by interacting with its DNA.
Article
Food Science & Technology
Ekaterina N. N. Lyukmanova, Pavel A. A. Mironov, Dmitrii S. S. Kulbatskii, Mikhail A. A. Shulepko, Alexander S. S. Paramonov, Elizaveta M. M. Chernaya, Yulia A. A. Logashina, Yaroslav A. A. Andreev, Mikhail P. P. Kirpichnikov, Zakhar O. O. Shenkarev
Summary: This article reports on the neurotoxin Phα1β (PnTx3-6) from the venom of the spider Phoneutria nigriventer, which acts as an antagonist on two ion channels involved in nociception. The study demonstrates that Phα1β can reduce both acute and chronic pain. NMR spectroscopy was used to determine the spatial structure and dynamics of Phα1β, providing important insights into the structure and function of spider toxins.
Article
Chemistry, Physical
Fengyi Cao, Gangqing Ma, Lin Mei, Genxing Zhu, Meng Song, Qi Qin, Mingli Jiao
Summary: In this study, a cysteine-containing PAF26 peptide derivative was designed to develop a covalently crosslinked antimicrobial hydrogel, which showed strong crosslinked networks and excellent antimicrobial abilities against Candida albicans, Staphylococcus aureus, and Escherichia coli.
COLLOIDS AND SURFACES A-PHYSICOCHEMICAL AND ENGINEERING ASPECTS
(2021)
Review
Biochemistry & Molecular Biology
Deborah E. Shalev
Summary: Metal chelation plays an important role in providing structural stability and forming reactive centers in metalloproteins. Peptide-metal complexes, which exist in nature, offer a way to study protein binding regions and control experimental variables effectively.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Biochemistry & Molecular Biology
Kathryn K. K. Oi, Kerstin Moehle, Matthias Schuster, Oliver Zerbe
Summary: Researchers have developed new antibiotic analogues that are effective against carbapenem-resistant Enterobacteriaceae. However, these analogues do not work well against Acinetobacter baumannii, despite being able to bind to the LptA protein associated with LPS transport in vitro. This study provides insights into the structural reasons why these analogues are not active against A. baumannii LptA.
Article
Biotechnology & Applied Microbiology
Nanakow Baiden, Chiara Gandini, Paul Goddard, Olga Sayanova
Summary: The increase in antibiotic resistance of bacterial strains is a major concern. Recent research has shown that the lysate of marine diatom Phaeodactylum tricornutum can significantly reduce the growth rate of Gram-negative bacteria. By engineering P. tricornutum, it was possible to enhance its antimicrobial activity against these bacteria. These results demonstrate that microalgae can be engineered to produce natural antimicrobial and anti-inflammatory compounds, providing an alternative to production-purpose antibiotics for treating serious bacterial infections.
ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS
(2023)
Article
Biochemistry & Molecular Biology
Haixin Qin, Weimin Zuo, Lilin Ge, Shirley W. I. Siu, Lei Wang, Xiaoling Chen, Chengbang Ma, Tianbao Chen, Mei Zhou, Zhijian Cao, Hang Fai Kwok
Summary: A novel brevinin peptide, B1AW, isolated from the skin secretions of the Wuyi torrent frog, showed antimicrobial activities and anticancer potency. By introducing a lysine residue, B1AW-K was designed to broaden the antimicrobial spectrum and inhibit the growth of various cancer cell lines. B1AW-K demonstrated faster adsorption to the anionic membrane compared to B1AW, suggesting its potential as a dual-action drug prototype that warrants further clinical investigation and validation.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
(2023)
Article
Biochemistry & Molecular Biology
Celine Landon, Yanyu Zhu, Mainak Mustafi, Jean-Baptiste Madinier, Dominique Lelievre, Vincent Aucagne, Agnes F. Delmas, James C. Weisshaar
Summary: This study used single-cell fluorescence imaging to investigate the effects of the β-defensin AvBD103b on living E. coli at physiological salt concentrations. The results provide key parameters for understanding the mechanism of action. The study found that AvBD103b interacts non-specifically with various polyanionic targets after penetrating the cell membranes, leading to cell death.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Nanoscience & Nanotechnology
Li Zhou, Quan Li Li, Hai Ming Wong
Summary: The novel dual-bioactive peptide constructed by grafting a dentotropic moiety onto an antimicrobial peptide has beneficial functions on tooth surfaces, including inhibiting bacterial adhesion, killing planktonic bacteria, destroying biofilms, protecting teeth, and inducing self-healing regeneration. Molecular dynamics simulations elucidate the main adsorption and mineralization mechanisms, which contribute to its promising potential for preventing dental caries and inducing in situ self-healing remineralization for decayed teeth.
ACS APPLIED MATERIALS & INTERFACES
(2021)
Article
Engineering, Biomedical
Qi Tang, Peng Tan, Zhaolai Dai, Tao Wang, Shenrui Xu, Yakun Ding, Junqi Jin, Xin Zhang, Yucheng Zhang, Chenlong Zhou, Zitian Yue, Huiyang Fu, Junshu Yan, Xi Ma
Summary: This study investigates the association between hydrophobicity and cell-penetrating peptide delivery efficiency, and successfully develops chimeric peptides P3I7 and P3L7 with strong antibacterial activity and low cytotoxicity. These peptides can effectively penetrate cells to eliminate intracellular pathogens mainly through endocytosis. The mechanism of membrane destruction makes them fast sterilizers and less prone to drug resistance. In vivo trials confirm their good biocompatibility and antibacterial infection effects, indicating their potential as affordable and effective antimicrobial agents against intracellular bacterial infections.
ACTA BIOMATERIALIA
(2023)
Review
Biochemistry & Molecular Biology
Arturo Martinez-Trejo, Juan Manuel Ruiz-Ruiz, Luis Uriel Gonzalez-Avila, Andres Saldana-Padilla, Cecilia Hernandez-Cortez, Miguel Angel Loyola-Cruz, Juan Manuel Bello-Lopez, Graciela Castro-Escarpulli
Summary: Acinetobacter baumannii is a significant nosocomial pathogen that causes severe infections in hospitalized patients. The development of high antimicrobial resistance profiles in this bacterium complicates patient treatment and prognosis. This resistance is mainly generated by genetic mutations that modify the target site of antimicrobial action, leading to resistance against a wide range of antibiotics.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Biochemistry & Molecular Biology
Wenjie Wang, Wanqing Yang, Shouying Du, Xinping Xi, Chengbang Ma, Lei Wang, Mei Zhou, Tianbao Chen
Summary: Bioactive proteins secreted by amphibian skin glands exhibit antimicrobial and antibiofilm activities, offering potential for treating antibiotic-resistant infections. The antimicrobial peptide temporin-FL and its analogues show potent activity against MRSA, with enhanced efficiency and lower cytotoxicity on mammalian cells. These peptides disrupt bacterial membranes, block biofilm formation, and provide insights for developing new drugs for MRSA infections.
FRONTIERS IN MOLECULAR BIOSCIENCES
(2021)
Article
Chemistry, Multidisciplinary
Rong Li, Thomas N. G. Handley, Wenyi Li, Neil M. O'Brien-Simpson, Mohammed Akhter Hossain, John D. Wade
Summary: Antimicrobial resistance is increasing and causing 700,000 deaths worldwide in 2020. Antimicrobial peptides are effective against drug-resistant pathogens and have a lower risk of developing resistance. Dimerisation of antimicrobial peptides through disulfide bonds can enhance antimicrobial activity and reduce toxicity.
AUSTRALIAN JOURNAL OF CHEMISTRY
(2023)
Article
Chemistry, Physical
Naoki Yamamoto, Kaoru Ohta, Atsuo Tamura, Keisuke Tominaga
JOURNAL OF PHYSICAL CHEMISTRY B
(2016)
Article
Multidisciplinary Sciences
Naoki Yamamoto, Shoko Tsuhara, Atsuo Tamura, Eri Chatani
SCIENTIFIC REPORTS
(2018)
Article
Biochemistry & Molecular Biology
Naoki Yamamoto, Atsuo Tamura
Article
Biochemistry & Molecular Biology
Ohki Kambara, Atsuo Tamura, Takashi Uchino, Kohji Yamamoto, Keisuke Tominaga
Article
Biochemistry & Molecular Biology
Shin Muraoka, Fumi Shima, Mitsugu Araki, Tomoko Inoue, Akiko Yoshimoto, Yuichi Ijiri, Nobuaki Seki, Atsuo Tamura, Takashi Kumasaka, Masaki Yamamoto, Tohru Kataoka
Article
Biochemistry & Molecular Biology
Fumi Shima, Yuichi Ijiri, Shin Muraoka, Jingling Liao, Min Ye, Mitsugu Araki, Kousuke Matsumoto, Naoki Yamamoto, Takeshi Sugimoto, Yoko Yoshikawa, Takashi Kumasaka, Masaki Yamamoto, Atsuo Tamura, Tohru Kataoka
JOURNAL OF BIOLOGICAL CHEMISTRY
(2010)
Article
Biochemistry & Molecular Biology
Kousuke Matsumoto, Fumi Shima, Shin Muraoka, Mitsugu Araki, Lizhi Hu, Yuichi Ijiri, Rina Hirai, Jingling Liao, Takashi Yoshioka, Takashi Kumasaka, Masaki Yamamoto, Atsuo Tamura, Tohru Kataoka
JOURNAL OF BIOLOGICAL CHEMISTRY
(2011)
Article
Biochemistry & Molecular Biology
Mitsugu Araki, Fumi Shima, Yoko Yoshikawa, Shin Muraoka, Yuichi Ijiri, Yuka Nagahara, Tomoya Shirono, Tohru Kataoka, Atsuo Tamura
JOURNAL OF BIOLOGICAL CHEMISTRY
(2011)
Article
Chemistry, Physical
Naoki Yamamoto, Tomoyo Andachi, Atsuo Tamura, Keisuke Tominaga
JOURNAL OF PHYSICAL CHEMISTRY B
(2015)
Article
Biochemistry & Molecular Biology
Naoki Yamamoto, Atsuo Tamura
Article
Multidisciplinary Sciences
Fumi Shima, Yoko Yoshikawa, Min Ye, Mitsugu Araki, Shigeyuki Matsumoto, Jingling Liao, Lizhi Hu, Takeshi Sugimoto, Yuichi Ijiri, Azusa Takeda, Yuko Nishiyama, Chie Sato, Shin Muraoka, Atsuo Tamura, Tsutomu Osoda, Ken-ichiro Tsuda, Tomoya Miyakawa, Hiroaki Fukunishi, Jiro Shimada, Takashi Kumasaka, Masaki Yamamoto, Tohru Kataoka
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2013)
Article
Biochemistry & Molecular Biology
Naoki Yamamoto, Taiki Akai, Rintaro Inoue, Masaaki Sugiyama, Atsuo Tamura, Eri Chatani
Article
Biochemistry & Molecular Biology
Shota Yamamoto, Kanon Nishimura, Kenta Morita, Sayuki Kanemitsu, Yuki Nishida, Tomoyuki Morimoto, Takashi Aoi, Atsuo Tamura, Tatsuo Maruyama
Summary: The study reported selective cell death induced by a novel peptide amphiphile that self-assembles to form nanofibers based on intracellular pH. The cytotoxicity of the peptide amphiphile was correlated with the pH of cells, and in vivo experiments showed remarkable anti-tumor activity when administered transcutaneously. This finding suggests that the distinct microenvironment inside living cells can be used as a trigger for intracellular self-assembly of peptide amphiphiles, providing new insights for drug discovery.
Article
Chemistry, Multidisciplinary
Kenta Morita, Kanon Nishimura, Shota Yamamoto, Natsumi Shimizu, Tomoko Yashiro, Ryoko Kawabata, Takashi Aoi, Atsuo Tamura, Tatsuo Maruyama
Summary: Cell-selective killing using molecular self-assemblies is an emerging concept for cancer therapy. In this study, a self-assembling molecule was synthesized in situ using a tyrosine kinase overexpressed in cancer cells. The self-assembled molecule exhibited selective cytotoxicity towards cancer cells and induced apoptotic cell death. Animal experiments demonstrated the antitumor activity of the self-assembled molecule.
Article
Nanoscience & Nanotechnology
Haruka Sakurai, Kanon Nishimura, Shota Yamamoto, Tatsuo Maruyama, Atsuo Tamura
Summary: Researchers have designed peptides that can penetrate cell membranes and selectively destroy tumor cells in low pH environments. These peptides were found to induce tumor cell death effectively while showing minimal effects on normal cells in experiments.
ACS APPLIED BIO MATERIALS
(2021)
Article
Biochemistry & Molecular Biology
Soojung Hahn, Gyuri Kim, Sang-Man Jin, Jae Hyeon Kim
Summary: This study utilized three-dimensional intestinal organoids to investigate the effects of metformin on inflammatory bowel disease (IBD) and found that metformin can enhance intestinal barrier function and reduce levels of inflammatory cytokines.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
V. V. Sudarev, M. S. Gette, S. V. Bazhenov, O. M. Tilinova, E. V. Zinovev, I. V. Manukhov, A. I. Kuklin, Yu. L. Ryzhykau, A. V. Vlasov
Summary: This study investigated the self-assembly processes of ferritin-based protein complexes and obtained structurally characterized oligomeric states. These results provide new potential and opportunities for the application of ferritin in various fields.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Yalda Sabaghi, Farnaz Pourfarzad, Leila Zolghadr, Azita Bahrami, Tahereh Shojazadeh, Alireza Farasat, Nematollah Gheibi
Summary: p-Coumaric acid (p-CA) is a plant compound with anti-cancer activities. This study designed a nano-liposomal carrier containing p-CA to enhance its effectiveness against melanoma cells. The findings showed that the liposomal form of p-CA had a greater impact on the cells. Kinetic modeling indicated that the best fitting model was zero-order.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
M. D. Nazmul Hasan, Md Mahfuzur Rahman, Al Asmaul Husna, Nobuhiro Nozaki, Osamu Yamato, Naoki Miura
Summary: This study investigated the expression of ncRNAs other than miRNAs in different histologic subtypes of canine mammary gland tumors (MGT). Three aberrantly expressed ncRNAs were identified as potential biomarkers for differentiating MGT subtypes. YRNA and tRFs expression levels were found to be decreased in metastatic compared to primary MGT cell lines.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Seine A. Shintani
Summary: In this study, the researchers used signal analysis to study the instantaneous amplitude and phase of sarcomeric oscillations in skeletal muscle. They identified two types of oscillations, sarcomeric oscillations and sarcosynced oscillations, and visualized their behavior during propagating waves. The researchers discovered the presence of sarcomeric defect holes and sarcomeric collision holes, which are important indicators for understanding the oscillation properties of sarcomeres. This finding has important implications for improving our understanding of muscle function and its regulatory mechanisms.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Shuanglin Zhang, Yuzhong Jia, Guolan Ma, Yanyan Yang, Zhenzhen Cao, Antao Luo, Zefu Zhang, Shihan Li, Jie Wen, Hanfeng Liu, Jihua Ma
Summary: Bupleurum is an antiarrhythmic agent that may exert its effects by inhibiting L-type calcium channels.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Tomotaka Ohkubo, Yasuhiko Matsumoto, Hiroaki Sasaki, Kaoru Kinoshita, Yuki Ogasawara, Takashi Sugita
Summary: This study found that Citrobacter koseri inhibits the growth of Staphylococcus epidermidis, disrupting the balance between S. epidermidis and Staphylococcus aureus, and exacerbating inflammation in atopic dermatitis.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Toshifumi Asano, Philipp Sasse, Takao Nakata
Summary: A Cre recombination-based fluorescent reporter system was developed to monitor cell-cell fusion. The system successfully detected the formation of multinuclear myotubes and placental syncytiotrophoblast. This tool could facilitate the study of cell-to-cell fusion.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Ke Shi, Yunlong Shan, Xiao Sun, Kuida Chen, Qiong Luo, Qiang Xu
Summary: This study found that low expression of TP53INP2 is associated with poor survival in colorectal cancer (CRC) patients. As the malignancy of CRC progresses, TP53INP2 expression gradually decreases. Knockdown of TP53INP2 promotes CRC cell proliferation and tumor growth. Mechanistically, TP53INP2 deficiency decreases phosphorylation of beta-catenin, leading to increased accumulation and enhanced nuclear translocation and transcriptional activity. Additionally, TP53INP2 sequesters TIM50, inhibiting its activation of beta-catenin. In conclusion, downregulation of TP53INP2 promotes CRC progression by activating beta-catenin.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Martina Rossi, Fabio Tomaselli, Alejandro Hochkoeppler
Summary: Oligomeric enzymes are known for their higher catalytic rates compared to monomeric enzymes, but the extent of additivity in their activity is still not well understood. This study used tetrameric rabbit lactate dehydrogenase as a model to examine the kinetics of its catalytic action. Surprisingly, when the concentration of the limiting reactant exceeded that of a single subunit, there was a significant slowdown in the enzyme's conformational rearrangements.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Amin Sahraei, Mohammad Javad Shamsoddini, Fakhrossadat Mohammadi, Leila Hassani
Summary: This study explored the inhibitory effects of gallium curcumin, indium curcumin, and vanadyl curcumin on the amyloid fibrillation of hen egg white lysozyme, as well as the binding interactions of these metal complexes with the enzyme. The results showed that indium curcumin and vanadyl curcumin exhibited higher binding affinities and stronger inhibitory effects on amyloid fibrillation compared to gallium curcumin.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Takahiro Sasaki, Yoshiki Kuse, Shinsuke Nakamura, Masamitsu Shimazawa
Summary: PGRN deficiency plays a significant role in cardiac remodeling and arrhythmias post-myocardial infarction (MI), potentially by promoting metabolic abnormalities in macrophages.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Hongwei Zhao, Yiqiang Li, Yibo Zhang, Chi Zhang
Summary: Electrical brain stimulation technology is commonly used to treat brain neurological disorders, but it can cause side effects. This study investigated the impact of electric fields on nerve fibers and revealed the possible origin of side effects. The findings provide guidance for selecting electrical parameters in clinical stimulation therapy.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Julia S. Scott, Lake-Ee Quek, Andrew J. Hoy, Johannes V. Swinnen, Zeyad D. Nassar, Lisa M. Butler
Summary: The fatty acid elongation enzyme ELOVL5 plays a critical role in promoting metastasis in prostate cancer. Knocking down ELOVL5 leads to the accumulation of malonyl-CoA, which inhibits fatty acid oxidation in mitochondria. This study highlights the importance of fatty acid elongation in regulating cell viability and provides a potential target for prostate cancer treatment.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Zan Zhou, Wen-jun Jiang, Li Li, Jun-qiang Si
Summary: This study investigates the effect of noise exposure on cognitive function in mice and explores the underlying molecular mechanisms. The findings suggest that noise exposure leads to increased inflammation, increased phosphorylation of Tau protein, and decreased levels of postsynaptic density protein, resulting in cognitive impairment.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)