Article
Multidisciplinary Sciences
Ethan S. Lavi, Z. Ping Lin, Elena S. Ratner
Summary: This study investigated the effects of non-homologous end-joining (NHEJ) genes on clinical outcomes of ovarian cancer patients, and identified several most important genes for predicting the prognosis of ovarian cancer patients.
Review
Biochemistry & Molecular Biology
Yunhui Li, Jian Yuan
Summary: DNA is the hereditary material in humans and most other organisms, crucial for accurate transmission of genetic information. Damage to DNA, including DSBs, can lead to gene mutations, genome instability, and even tumorigenesis if repair mechanisms are defective. Protein deubiquitination is essential in DNA DSB repair, and understanding the molecular mechanisms of DUB regulation can provide insights for combatting human diseases and developing new therapeutic approaches.
JOURNAL OF ZHEJIANG UNIVERSITY-SCIENCE B
(2021)
Article
Genetics & Heredity
Liat Morciano, Renana M. Elgrabli, Drora Zenvirth, Ayelet Arbel-Eden
Summary: Several events occur during meiosis to reshape the genome and transfer it to the next generation. The occurrence of new meiotic mutations is closely linked to homologous recombination and depends on Spo11-induced DNA breaks. Through studying the timing of mutation and recombination events in cells deficient in DNA HR-repair genes, we found that Rad54 and Tid1 play different roles in meiotic mutation occurrence. We also observed that single-stranded DNA may be a potential source for mutagenicity during meiosis. Overall, we propose that de novo mutations during meiosis contribute to the diversification of the genome.
Review
Cell Biology
Lia Yedidia-Aryeh, Michal Goldberg
Summary: Cancer development is often associated with impaired DNA repair and DNA damage signaling pathways. Estrogen has a regulatory role in the repair and cellular response to DNA double-strand breaks. There is a complex interplay between the cellular DNA damage response and the actions of estrogen, which may contribute to the development of estrogen-dependent cancers.
Review
Genetics & Heredity
Shaylee R. Kieffer, Noel F. Lowndes
Summary: Loss or rearrangement of genetic information can occur due to incorrect responses to DNA double strand breaks (DSBs). Cellular responses to DSBs involve coordinated events to detect and appropriately respond to the damage, preserving genomic integrity. This article discusses the complex regulation of the immediate-early, early, and late responses to DSBs prior to repair.
FRONTIERS IN GENETICS
(2022)
Article
Genetics & Heredity
Alexander Smirnov, Nariman Battulin
Summary: The generation of transgenic organisms through pronuclear microinjection has become a routine procedure, but the recombination between transgene molecules immediately after injection is still not well understood. Injected molecules often form head-to-tail tandem repeats called concatemers. This review focuses on possible concatenation mechanisms, as well as features of concatemers such as palindromic junctions and repeat-induced gene silencing (RIGS), and speculates on how DNA repair pathways cooperate to create a multicopy concatenated insert.
Article
Plant Sciences
Fabienne Gehrke, Angelina Schindele, Holger Puchta
Summary: Heritable plant chromosome engineering can be achieved in somatic cells using CRISPR/Cas to induce nonhomologous double-strand break repair pathways. This technology allows for large-scale restructuring of plant chromosomes, including duplications, inversions, and translocations. The use of nonhomologous end joining pathways in somatic cells facilitates efficient chromosomal rearrangements. This breakthrough has the potential to revolutionize plant breeding.
Article
Biochemistry & Molecular Biology
Talia Hatkevich, Danny E. Miller, Carolyn A. Turcotte, Margaret C. Miller, Jeff Sekelsky
Summary: A novel backup repair mechanism has been identified in fruit fly meiosis, where DSB repair is initiated by homologous recombination but completed by nonhomologous end joining in the absence of the homologous chromosome. This precise repair process is proposed to be conserved and used to overcome challenges in normal meiosis.
NUCLEIC ACIDS RESEARCH
(2021)
Article
Cell Biology
Muddenahalli Srinivasa Sudhanva, Gurusamy Hariharasudhan, Semo Jun, Gwanwoo Seo, Radhakrishnan Kamalakannan, Hyun Hee Kim, Jung-Hee Lee
Summary: This study demonstrates that miR-145 suppresses DNA-PKcs expression, affecting DNA double-strand break repair and rendering cells sensitive to ionizing radiation. Additionally, miR-145 inhibition is associated with increased Akt1 phosphorylation and upregulation of DNA-PKcs in cancer cells.
Article
Biochemistry & Molecular Biology
Xiaolu Ma, Chen Wang, Bo Zhou, Zina Cheng, Zhiyong Mao, Tie-Shan Tang, Caixia Guo
Summary: This study demonstrated the important role of Pol eta in ETO-induced DSB repair, and identified Kap1 as a novel regulator. Kap1 regulates the function of Pol eta in DSB repair by facilitating Rad18 recruitment and stabilizing the Rad18-Pol eta association.
JOURNAL OF BIOLOGICAL CHEMISTRY
(2022)
Review
Biochemistry & Molecular Biology
Emil Mladenov, Veronika Mladenova, Martin Stuschke, George Iliakis
Summary: Radiation therapy is an essential part of cancer management, utilizing different modalities of ionizing radiation to mitigate cancer progression. This article reviews the molecular mechanisms underlying the repair pathways involved in DNA damage caused by radiation therapy. It discusses factors and processes that influence the choice of repair pathways throughout the cell cycle and highlights the preference for homologous recombination at low radiation doses. The article also explores the molecular basis of transitions from high fidelity to error-prone repair pathways and analyzes the coordination and consequences of this transition on cell viability and genomic stability. Lastly, it discusses how these advances can contribute to the development of improved cancer treatment protocols in radiation therapy.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)
Article
Biochemistry & Molecular Biology
Sijie Liu, Yu Hua, Jingna Wang, Lingyan Li, Junjie Yuan, Bo Zhang, Ziyang Wang, Jianguo Ji, Daochun Kong
Summary: Protection of 30 overhangs in DNA double-strand breaks (DSBs) repair is achieved through the transient formation of RNA-DNA hybrids, with RNA polymerase III (RNAPIII) responsible for synthesizing the RNA strand. CtIP and MRN nuclease activity are required for initiating RNAPIII-mediated RNA synthesis at DSBs. Reduced RNAPIII levels suppress homologous recombination (HR) and lead to genetic loss > 30 bp at DSBs.
Article
Biochemistry & Molecular Biology
Palina Kot, Takaaki Yasuhara, Atsushi Shibata, Miyako Hirakawa, Yu Abe, Motohiro Yamauchi, Naoki Matsuda
Summary: Chromosome rearrangements, commonly found in human cancer, result from misrejoining of DNA double-strand breaks at different genomic regions. This study identified DNA single-strand breaks as a major source of double-strand breaks leading to chromosome rearrangements, repaired through homologous recombination. Downregulation of homologous recombination factors promoted the formation of radial chromosomes upon hydrogen peroxide treatment, highlighting the importance of these factors in suppressing gene fusion.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2021)
Review
Biochemistry & Molecular Biology
Noemi Alvarez-Lindo, Teresa Suarez, Enrique J. de la Rosa
Summary: Genetic mosaicism is an intriguing feature of the mammalian brain, similar to the immune system, that generates diversity in genetic information and cellular function. However, its origin and physiological significance are still poorly understood. Our studies in the developing retina shed light on the relationship between DNA rearrangements, neurogenesis, and early neuronal cell death, providing new insights into the mechanisms of DNA rearrangements in the developing brain.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Review
Cell Biology
Dale A. Ramsden, Juan Carvajal-Garcia, Gaorav P. Gupta
Summary: DNA polymerase theta (Pol theta)-mediated end joining is a recently characterized DNA repair pathway that functions in various cellular contexts to repair DNA double-strand breaks that are not repaired by other pathways. Pol theta-mediated end joining both helps maintain the genome and causes genome instability, and is an emerging therapeutic target in cancer.
NATURE REVIEWS MOLECULAR CELL BIOLOGY
(2022)
Article
Biotechnology & Applied Microbiology
Ralf Moeller, Marina Raguse, Guenther Reitz, Ryuichi Okayasu, Zuofeng Li, Stuart Klein, Peter Setlow, Wayne L. Nicholson
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
(2014)
Article
Oncology
Takahisa Hirai, Hidenori Shirai, Hiroaki Fujimori, Ryuichi Okayasu, Keisuke Sasai, Mitsuko Masutani
Article
Genetics & Heredity
Hirohiko Yajima, Hiroshi Fujisawa, Nakako Izumi Nakajima, Hirokazu Hirakawa, Penelope A. Jeggo, Ryuichi Okayasu, Akira Fujimori
Review
Oncology
Ryuichi Okayasu
INTERNATIONAL JOURNAL OF CANCER
(2012)
Article
Medicine, Research & Experimental
Maki Ohara, Shinichi Kimura, Aya Tanaka, Ken Ohnishi, Ryuichi Okayasu, Nobuo Kubota
INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE
(2011)
Article
Medicine, Research & Experimental
Tatsuya Segawa, Yoshihiro Fujii, Aya Tanaka, Shin-Ichi Bando, Ryuichi Okayasu, Ken Ohnishi, Nobuo Kubota
INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE
(2014)
Article
Biology
Takamitsu A. Kato, Ryuichi Okayasu, Penny A. Jeggo, Akira Fujimori
INTERNATIONAL JOURNAL OF RADIATION BIOLOGY
(2011)
Meeting Abstract
Oncology
T. Hirai, H. Shirai, R. Okayasu, K. Sasai, M. Masutani
INTERNATIONAL JOURNAL OF RADIATION ONCOLOGY BIOLOGY PHYSICS
(2011)
Article
Microbiology
Ralf Moeller, Peter Setlow, Mario Pedraza-Reyes, Ryuichi Okayasu, Guenther Reitz, Wayne L. Nicholson
JOURNAL OF BACTERIOLOGY
(2011)
Article
Biochemistry & Molecular Biology
Natsumi Shimizu, Nakako Izumi Nakajima, Takaaki Tsunematsu, Ikuko Ogawa, Hidehiko Kawai, Ryoichi Hirayama, Akira Fujimori, Akiko Yamada, Ryuichi Okayasu, Naozumi Ishimaru, Takashi Takata, Yasusei Kudo
JOURNAL OF BIOLOGICAL CHEMISTRY
(2013)
Article
Biology
Kakuji Okumura, Yuko Kinashi, Yoshihisa Kubota, Erika Kitajima, Ryuichi Okayasu, Koji Ono, Sentaro Takahashi
JOURNAL OF RADIATION RESEARCH
(2013)
Article
Biotechnology & Applied Microbiology
Cuihua Liu, Tetsuya Kawata, Yoshiya Furusawa, Guangming Zhou, Kohei Inoue, Junichi Fukada, Ryuichi Kota, Kerry George, Francis Cucinotta, Ryuichi Okayasu
MUTATION RESEARCH-GENETIC TOXICOLOGY AND ENVIRONMENTAL MUTAGENESIS
(2013)
Article
Biotechnology & Applied Microbiology
Ryoichi Hirayama, Akiko Uzawa, Nobuhiro Takase, Yoshitaka Matsumoto, Miho Noguchi, Kana Koda, Masakuni Ozaki, Kei Yamashita, Huizi Li, Yuki Kase, Naruhiro Matsufuji, Sachiko Koike, Shin-ichiro Masunaga, Koichi Ando, Ryuichi Okayasu, Yoshiya Furusawa
MUTATION RESEARCH-GENETIC TOXICOLOGY AND ENVIRONMENTAL MUTAGENESIS
(2013)
Article
Multidisciplinary Sciences
Nakako Izumi Nakajima, Holly Brunton, Ritsuko Watanabe, Amruta Shrikhande, Ryoichi Hirayama, Naruhiro Matsufuji, Akira Fujimori, Takeshi Murakami, Ryuichi Okayasu, Penny Jeggo, Atsushi Shibata
Article
Biology
Ryoichi Hirayama, Atsushi Ito, Miho Noguchi, Yoshitaka Matsumoto, Akiko Uzawa, Gen Kobashi, Ryuichi Okayasu, Yoshiya Furusawa
RADIATION RESEARCH
(2013)
Article
Biochemistry & Molecular Biology
Soojung Hahn, Gyuri Kim, Sang-Man Jin, Jae Hyeon Kim
Summary: This study utilized three-dimensional intestinal organoids to investigate the effects of metformin on inflammatory bowel disease (IBD) and found that metformin can enhance intestinal barrier function and reduce levels of inflammatory cytokines.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
V. V. Sudarev, M. S. Gette, S. V. Bazhenov, O. M. Tilinova, E. V. Zinovev, I. V. Manukhov, A. I. Kuklin, Yu. L. Ryzhykau, A. V. Vlasov
Summary: This study investigated the self-assembly processes of ferritin-based protein complexes and obtained structurally characterized oligomeric states. These results provide new potential and opportunities for the application of ferritin in various fields.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Yalda Sabaghi, Farnaz Pourfarzad, Leila Zolghadr, Azita Bahrami, Tahereh Shojazadeh, Alireza Farasat, Nematollah Gheibi
Summary: p-Coumaric acid (p-CA) is a plant compound with anti-cancer activities. This study designed a nano-liposomal carrier containing p-CA to enhance its effectiveness against melanoma cells. The findings showed that the liposomal form of p-CA had a greater impact on the cells. Kinetic modeling indicated that the best fitting model was zero-order.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
M. D. Nazmul Hasan, Md Mahfuzur Rahman, Al Asmaul Husna, Nobuhiro Nozaki, Osamu Yamato, Naoki Miura
Summary: This study investigated the expression of ncRNAs other than miRNAs in different histologic subtypes of canine mammary gland tumors (MGT). Three aberrantly expressed ncRNAs were identified as potential biomarkers for differentiating MGT subtypes. YRNA and tRFs expression levels were found to be decreased in metastatic compared to primary MGT cell lines.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Seine A. Shintani
Summary: In this study, the researchers used signal analysis to study the instantaneous amplitude and phase of sarcomeric oscillations in skeletal muscle. They identified two types of oscillations, sarcomeric oscillations and sarcosynced oscillations, and visualized their behavior during propagating waves. The researchers discovered the presence of sarcomeric defect holes and sarcomeric collision holes, which are important indicators for understanding the oscillation properties of sarcomeres. This finding has important implications for improving our understanding of muscle function and its regulatory mechanisms.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Shuanglin Zhang, Yuzhong Jia, Guolan Ma, Yanyan Yang, Zhenzhen Cao, Antao Luo, Zefu Zhang, Shihan Li, Jie Wen, Hanfeng Liu, Jihua Ma
Summary: Bupleurum is an antiarrhythmic agent that may exert its effects by inhibiting L-type calcium channels.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Tomotaka Ohkubo, Yasuhiko Matsumoto, Hiroaki Sasaki, Kaoru Kinoshita, Yuki Ogasawara, Takashi Sugita
Summary: This study found that Citrobacter koseri inhibits the growth of Staphylococcus epidermidis, disrupting the balance between S. epidermidis and Staphylococcus aureus, and exacerbating inflammation in atopic dermatitis.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Toshifumi Asano, Philipp Sasse, Takao Nakata
Summary: A Cre recombination-based fluorescent reporter system was developed to monitor cell-cell fusion. The system successfully detected the formation of multinuclear myotubes and placental syncytiotrophoblast. This tool could facilitate the study of cell-to-cell fusion.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Ke Shi, Yunlong Shan, Xiao Sun, Kuida Chen, Qiong Luo, Qiang Xu
Summary: This study found that low expression of TP53INP2 is associated with poor survival in colorectal cancer (CRC) patients. As the malignancy of CRC progresses, TP53INP2 expression gradually decreases. Knockdown of TP53INP2 promotes CRC cell proliferation and tumor growth. Mechanistically, TP53INP2 deficiency decreases phosphorylation of beta-catenin, leading to increased accumulation and enhanced nuclear translocation and transcriptional activity. Additionally, TP53INP2 sequesters TIM50, inhibiting its activation of beta-catenin. In conclusion, downregulation of TP53INP2 promotes CRC progression by activating beta-catenin.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Martina Rossi, Fabio Tomaselli, Alejandro Hochkoeppler
Summary: Oligomeric enzymes are known for their higher catalytic rates compared to monomeric enzymes, but the extent of additivity in their activity is still not well understood. This study used tetrameric rabbit lactate dehydrogenase as a model to examine the kinetics of its catalytic action. Surprisingly, when the concentration of the limiting reactant exceeded that of a single subunit, there was a significant slowdown in the enzyme's conformational rearrangements.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Amin Sahraei, Mohammad Javad Shamsoddini, Fakhrossadat Mohammadi, Leila Hassani
Summary: This study explored the inhibitory effects of gallium curcumin, indium curcumin, and vanadyl curcumin on the amyloid fibrillation of hen egg white lysozyme, as well as the binding interactions of these metal complexes with the enzyme. The results showed that indium curcumin and vanadyl curcumin exhibited higher binding affinities and stronger inhibitory effects on amyloid fibrillation compared to gallium curcumin.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Takahiro Sasaki, Yoshiki Kuse, Shinsuke Nakamura, Masamitsu Shimazawa
Summary: PGRN deficiency plays a significant role in cardiac remodeling and arrhythmias post-myocardial infarction (MI), potentially by promoting metabolic abnormalities in macrophages.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Hongwei Zhao, Yiqiang Li, Yibo Zhang, Chi Zhang
Summary: Electrical brain stimulation technology is commonly used to treat brain neurological disorders, but it can cause side effects. This study investigated the impact of electric fields on nerve fibers and revealed the possible origin of side effects. The findings provide guidance for selecting electrical parameters in clinical stimulation therapy.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Julia S. Scott, Lake-Ee Quek, Andrew J. Hoy, Johannes V. Swinnen, Zeyad D. Nassar, Lisa M. Butler
Summary: The fatty acid elongation enzyme ELOVL5 plays a critical role in promoting metastasis in prostate cancer. Knocking down ELOVL5 leads to the accumulation of malonyl-CoA, which inhibits fatty acid oxidation in mitochondria. This study highlights the importance of fatty acid elongation in regulating cell viability and provides a potential target for prostate cancer treatment.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Zan Zhou, Wen-jun Jiang, Li Li, Jun-qiang Si
Summary: This study investigates the effect of noise exposure on cognitive function in mice and explores the underlying molecular mechanisms. The findings suggest that noise exposure leads to increased inflammation, increased phosphorylation of Tau protein, and decreased levels of postsynaptic density protein, resulting in cognitive impairment.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)