Article
Plant Sciences
Shuai Liu, Hua Zhong, Qiang Wang, Caixiang Liu, Ting Li, Zhaohua Peng, Yangsheng Li, Hongyu Zhang, Jianglin Liao, Yingjin Huang, Zhaohai Wang
Summary: This study analyzed 454 UDP glucose pyrophosphorylase (UDPGP) proteins from 76 different species, classifying them into three clades based on phylogenetic tree and orthogroups. The study revealed a conserved evolutionary history and functional characteristics of UDPGP genes.
FRONTIERS IN PLANT SCIENCE
(2021)
Article
Multidisciplinary Sciences
Zhongyang Xu, Jiasen He, Muhammad Tehseen Azhar, Zhen Zhang, Senmiao Fan, Xiao Jiang, Tingting Jia, Haihong Shang, Youlu Yuan
Summary: This study identified 66 UDP-glucose pyrophosphorylase (UGP) genes from four cotton species, which play an important role in cotton fiber development. The analysis of evolutionary relationship, gene structure, and expression revealed the conservation and function of UGP genes in cotton fiber development.
Article
Multidisciplinary Sciences
Tuan D. Tran, Munira Aman Ali, Davin Lee, Marie-Anne Felix, Robert J. Luallen
Summary: The study reveals the mechanism by which an intracellular bacterium spreads between intestinal epithelial cells of a natural host by forming filaments. This process is regulated by a conserved nutrient-sensing pathway and reduces host lifespan and fecundity.
NATURE COMMUNICATIONS
(2022)
Article
Chemistry, Multidisciplinary
Jin-Min Shi, Ting-Ting Wu, Hui Zhou, Yao-Yao Zhang, Li Liu, Goran Widmalm, Josef Voglmeir
Summary: Galactokinases (GalKs) are a group of structurally conserved proteins found in all life forms. A unique GalK orthologue from the bacterium Solitalea canadensis (ScGalK) has been discovered with relaxed substrate requirements and the ability to convert xylose to xylose-1-phosphate. Further investigation identified a putative Glucose-1-phosphate Uridyltransferase (ScGPUT) in close proximity to the ScGalK gene, which can convert xylose-1-phosphate to uridine diphosphate xylose (UDP-xylose) with the presence of uridine triphosphate (UTP).
Article
Microbiology
Xu Han, Cecilia D'Angelo, Ainara Otamendi, Javier O. O. Cifuente, Elisa de Astigarraga, Borja Ochoa-Lizarralde, Martin Grininger, Francoise H. H. Routier, Marcelo E. E. Guerin, Jana Fuehring, Oier Etxebeste, Sean R. R. Connell
Summary: Invasive aspergillosis is a serious fungal infection caused by molds in the genus Aspergillus. The fungal cell wall is a target for antifungal drugs, and UDP-glucose pyrophosphorylase (UGP) is an important enzyme involved in its biosynthesis. By studying the structure of UGP in Aspergillus nidulans, we reveal its vital role and uncover the molecular mechanisms of substrate recognition and specificity. This study provides insights into the catalysis and regulation of enzymes and lays the foundation for future antifungal drug development.
Article
Microbiology
Oriana Villafraz, Helene Baudouin, Muriel Mazet, Hanna Kulyk, Jean-William Dupuy, Erika Pineda, Cyrille Botte, Daniel Ken Inaoka, Jean-Charles Portais, Frederic Bringaud
Summary: Trypanosomatids sequester glycolysis inside peroxisomes called glycosomes and have functional sugar nucleotide biosynthetic pathways in addition to cytosolic ones. The enzyme UDP-glucose pyrophosphorylase (UGP) is imported into glycosomes by piggybacking on phosphoenolpyruvate carboxykinase (PEPCK) without a known peroxisome-targeting signal, suggesting a unique mechanism for protein import. These findings shed light on the unconventional compartmentalization of metabolic pathways in trypanosomatids.
Article
Biochemistry & Molecular Biology
Rin Sueda, Kento Yoshida, Masahiko Onodera, Toshiaki Fukui, Rie Yatsunami, Satoshi Nakamura
Summary: The study revealed the presence of a gene cluster analogous to the bacterial glycogen synthesis operon in the genome of the extremely halophilic archaeon Haloarcula japonica. By focusing on a GlgC homolog of Ha. japonica, the recombinant enzyme showed high activity towards specific substrates under certain conditions, indicating its potential role as a GDP-glucose pyrophosphorylase in Ha. japonica.
BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY
(2021)
Review
Biotechnology & Applied Microbiology
Yan-Hui Bi, Zhi Li, Zhi-Gang Zhou
Summary: Saccharina japonica, an economically and ecologically important brown alga, had hindered its karyotype analysis due to the small and similar metaphase chromosomes. However, the combination of DNA-intercalating dye 4 ', 6-Diamidino-2-phenylindole (DAPI) and fluorescence in situ hybridization (FISH) technique had progressively promoted its karyotype analysis in recent years. Various molecular markers, such as rDNAs, sex-linked markers, telomeric repeated sequences, and SSRs, were used in the karyotyping of S. japonica using FISH and other techniques. Additionally, attempts were made to use immunocytochemistry with kinetochore protein for more accurate chromosome analysis.
ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS
(2023)
Article
Multidisciplinary Sciences
Chenxi Qiu, Huilin Tao, Yu Shen, Qingsheng Qi, Jin Hou
Summary: Regulating storage carbohydrate synthesis improves the availability of acetyl-CoA and malonyl-CoA, facilitating the synthesis of their derived chemicals.
Article
Plant Sciences
Sandeep Jaiswal, Krishnayan Paul, K. Venkat Raman, Saurabh Tyagi, Manjesh Saakre, Jyotsana Tilgam, Sougata Bhattacharjee, Joshitha Vijayan, Kalyan Kumar Mondal, Rohini Sreevathsa, Debasis Pattanayak
Summary: RNAi-mediated downregulation of the StUGPase gene expression level in potato can reduce the accumulation of reducing sugars during cold storage, leading to the development of CIS tolerant potato varieties.
FRONTIERS IN PLANT SCIENCE
(2023)
Article
Biochemistry & Molecular Biology
Linhong Teng, Wentao Han, Xiao Fan, Xiaowen Zhang, Dong Xu, Yitao Wang, Sadequr Rahman, Matteo Pellegrini, Thomas Mock, Naihao Ye
Summary: The study used multiple methods to investigate cytosine methylation in the chloroplast DNA of the multicellular brown alga Saccharina japonica. Higher methylation levels were found in gametophytes compared to sporophytes, with gene-specific methylation associated with photosynthetic genes. Co-expression networks between nucleus-encoded photosynthesis genes and their chloroplast-encoded counterparts were implicated in higher photosynthetic performance in sporophytes.
PLANT MOLECULAR BIOLOGY
(2021)
Article
Multidisciplinary Sciences
Qizheng Liu, Guoqiang He, Jinkang Wei, Caihong Dong
Summary: This study identified significant differences in gene expression between sclerotial and hyphal cells at the sclerotial initiation stage, indicating that sclerotial cells are more resistant to ROS stress through transcriptional regulation of related genes. This suggests a potential mechanism for the higher tolerance of sclerotial cells to oxidative stress compared to hyphal cells.
SCIENTIFIC REPORTS
(2021)
Article
Biochemistry & Molecular Biology
Mashael A. Alghamdi, Rania A. Hussien, Yuanzhang Zheng, Hiral P. Patel, Matias D. Asencion Diez, Alberto A. Iglesias, Dali Liu, Miguel A. Ballicora
Summary: The allosteric regulation of ADP-glucose pyrophosphorylase plays a critical role in glycogen and starch biosynthesis. This study investigates the binding and activation of the enzyme by fructose 6-phosphate (Fru6P) and pyruvate (Pyr). It is found that a sulfate ion in the crystal structure of the enzyme acts as a regulatory site similar to Fru6P. Ser72 interacts with this sulfate ion, and its mutation affects the interaction with Fru6P and enzyme activation. Mutations in Ser72 hinder the binding of Fru6P and the inhibitor AMP, while still allowing activation by Pyr. These findings suggest that ADP-glucose pyrophosphorylase in Agrobacterium tumefaciens has distinct sites for Fru6P and Pyr, working together to regulate glycogen biosynthesis.
Article
Plant Sciences
Wei Wang, Sonja Viljamaa, Ondrej Hodek, Thomas Moritz, Totte Niittyla
Summary: The role of SUS in cellulose biosynthesis in Arabidopsis has been refuted, as alternative UDP-glucose biosynthesis pathways were found to be employed.
Article
Plant Sciences
Wenqi Zhang, Qi Meng, Wei Liu, Pinzhu Qin, Bowen Li, Guohua Xu
Summary: Plants respond to phosphate starvation stress by increasing carbohydrate accumulation and shoot-to-root transport, which activates signaling pathways. Overexpression of the Ugp1 gene decreases plant biomass, increases sucrose content, and promotes phosphate accumulation.
PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS
(2023)