Metagenomics reveals the high polycyclic aromatic hydrocarbon-degradation potential of abundant uncultured bacteria from chronically polluted subantarctic and temperate coastal marine environments

New FeFe-hydrogenase genes identified in a metagenomic fosmid library from a municipal wastewater treatment plant as revealed by high-throughput sequencing

(2015) Geizecler Tomazetto et al.   RESEARCH IN MICROBIOLOGY

Isolation and characterization of Cycloclasticus strains from Yellow Sea sediments and biodegradation of pyrene and fluoranthene by their syntrophic association with Marinobacter strains

(2014) Zhisong Cui et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Ecology of intertidal microbial biofilms: Mechanisms, patterns and future research needs

(2014) Carl Van Colen et al.   JOURNAL OF SEA RESEARCH

SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information

(2014) Marco Biasini et al.   NUCLEIC ACIDS RESEARCH

Ring-Hydroxylating Oxygenase database: a database of bacterial aromatic ring-hydroxylating oxygenases in the management of bioremediation and biocatalysis of aromatic compounds

(2014) Joydeep Chakraborty et al.   Environmental Microbiology Reports

Functional characterization of diverse ring-hydroxylating oxygenases and induction of complex aromatic catabolic gene clusters in Sphingobium sp. PNB

(2014) Pratick Khara et al.   FEBS Open Bio

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Abundance, Dynamics, and Biogeographic Distribution of Seven Polycyclic Aromatic Hydrocarbon Dioxygenase Gene Variants in Coastal Sediments of Patagonia

(2012) Magalí S. Marcos et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Multiplicity of genes for aromatic ring-hydroxylating dioxygenases in Mycobacterium isolate KMS and their regulation

(2012) Chun Zhang et al.   BIODEGRADATION

Complete Genome Sequence of the Pyrene-Degrading Bacterium Cycloclasticus sp. Strain P1

(2012) Qiliang Lai et al.   JOURNAL OF BACTERIOLOGY

An insight into the origin and functional evolution of bacterial aromatic ring-hydroxylating oxygenases

(2012) Joydeep Chakraborty et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Large-Scale Control on the Patagonian Climate

(2012) R. Garreaud et al.   JOURNAL OF CLIMATE

Alkane Biodegradation Genes from Chronically Polluted Subantarctic Coastal Sediments and Their Shifts in Response to Oil Exposure

(2012) Lilian M. Guibert et al.   MICROBIAL ECOLOGY

The PhyloPythiaS Web Server for Taxonomic Assignment of Metagenome Sequences

(2012) Kaustubh Raosaheb Patil et al.   PLoS One

Comparison of the Specificities and Efficacies of Primers for Aromatic Dioxygenase Gene Analysis of Environmental Samples

(2011) Shoko Iwai et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Statistical Potential for Modeling and Ranking of Protein–Ligand Interactions

(2011) Hao Fan et al.   Journal of Chemical Information and Modeling

Fast docking using the CHARMM force field with EADock DSS

(2011) Aurélien Grosdidier et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Sources and distribution of aliphatic and polyaromatic hydrocarbons in coastal sediments from the Ushuaia Bay (Tierra del Fuego, Patagonia, Argentina)

(2011) Marta G. Commendatore et al.   MARINE ENVIRONMENTAL RESEARCH

SwissDock, a protein-small molecule docking web service based on EADock DSS

(2011) A. Grosdidier et al.   NUCLEIC ACIDS RESEARCH

Polynuclear aromatic and chlorinated hydrocarbons in mussels from the coastal zone of Ushuaia, Tierra del Fuego, Argentina

(2010) Oscar A. Amin et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

How a Bacterial Community Originating from a Contaminated Coastal Sediment Responds to an Oil Input

(2010) Sandrine Païssé et al.   MICROBIAL ECOLOGY

A new bioinformatics analysis tools framework at EMBL-EBI

(2010) M. Goujon et al.   NUCLEIC ACIDS RESEARCH

Substrate Specificity and Structural Characteristics of the Novel Rieske Nonheme Iron Aromatic Ring-Hydroxylating Oxygenases NidAB and NidA3B3 from Mycobacterium vanbaalenii PYR-1

(2010) O. Kweon et al.   mBio

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Novel organization of aromatic degradation pathway genes in a microbial community as revealed by metagenomic analysis

(2009) Hikaru Suenaga et al.   ISME Journal

Aromatic hydrocarbon degradation genes from chronically polluted Subantarctic marine sediments

(2009) M.S. Marcos et al.   LETTERS IN APPLIED MICROBIOLOGY

Levels and toxicity of polycyclic aromatic hydrocarbons in marine sediments

(2009) Anastasia Nikolaou et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

Marine protected areas, spatial scales, and governance: implications for the conservation of breeding seabirds

(2009) Pablo Yorio   Conservation Letters

Novel aromatic ring-hydroxylating dioxygenase genes from coastal marine sediments of Patagonia

(2008) Mariana Lozada et al.   BMC MICROBIOLOGY

A pyrene-degrading consortium from deep-sea sediment of the West Pacific and its key memberCycloclasticussp. P1

(2008) Baojiang Wang et al.   ENVIRONMENTAL MICROBIOLOGY

QMEAN: A comprehensive scoring function for model quality assessment

(2007) Pascal Benkert et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS