A review on recent developments in mass spectrometry instrumentation and quantitative tools advancing bacterial proteomics
出版年份 2013 全文链接
标题
A review on recent developments in mass spectrometry instrumentation and quantitative tools advancing bacterial proteomics
作者
关键词
Mass spectrometry, Quantitative proteomics, Multidimensional chromatography, Microbiology
出版物
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
Volume 97, Issue 11, Pages 4749-4762
出版商
Springer Nature
发表日期
2013-05-01
DOI
10.1007/s00253-013-4897-7
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Identification and imaging of peptides and proteins on Enterococcus faecalis biofilms by matrix assisted laser desorption ionization mass spectrometry
- (2012) Melvin Blaze M. T. et al. ANALYST
- QconCATs: design and expression of concatenated protein standards for multiplexed protein quantification
- (2012) Deborah M. Simpson et al. ANALYTICAL AND BIOANALYTICAL CHEMISTRY
- An insight into iTRAQ: where do we stand now?
- (2012) Caroline Evans et al. ANALYTICAL AND BIOANALYTICAL CHEMISTRY
- Differential proteomic analysis of the response of Stenotrophomonas maltophilia to imipenem
- (2012) Laurence Van Oudenhove et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- The proteomic future: where mass spectrometry should be taking us
- (2012) Jay J. Thelen et al. BIOCHEMICAL JOURNAL
- Global relative and absolute quantitation in microbial proteomics
- (2012) Andreas Otto et al. CURRENT OPINION IN MICROBIOLOGY
- Microbial metaproteomics: identifying the repertoire of proteins that microorganisms use to compete and cooperate in complex environmental communities
- (2012) Robert L. Hettich et al. CURRENT OPINION IN MICROBIOLOGY
- Estimation and optimization of the peak capacity of one-dimensional gradient high performance liquid chromatography using a long monolithic silica capillary column
- (2012) Kanta Horie et al. JOURNAL OF CHROMATOGRAPHY A
- Comparison of One- and Two-dimensional Liquid Chromatography Approaches in the Label-free Quantitative Analysis of Methylocella silvestris
- (2012) Nisha A. Patel et al. JOURNAL OF PROTEOME RESEARCH
- Multi High-Throughput Approach for Highly Selective Identification of Vaccine Candidates: the Group A Streptococcus Case
- (2012) Giuliano Bensi et al. MOLECULAR & CELLULAR PROTEOMICS
- Selected reaction monitoring–based proteomics: workflows, potential, pitfalls and future directions
- (2012) Paola Picotti et al. NATURE METHODS
- A Probabilistic Framework for Peptide and Protein Quantification from Data-Dependent and Data-Independent LC-MS Proteomics Experiments
- (2012) Keith Richardson et al. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY
- Proteomic Analysis of Neisseria gonorrhoeae Biofilms Shows Shift to Anaerobic Respiration and Changes in Nutrient Transport and Outermembrane Proteins
- (2012) Nancy J. Phillips et al. PLoS One
- Performance Characteristics of a New Hybrid Quadrupole Time-of-Flight Tandem Mass Spectrometer (TripleTOF 5600)
- (2011) Genna L. Andrews et al. ANALYTICAL CHEMISTRY
- Proteomics moves from expression to turnover: update and future perspective
- (2011) Mary K Doherty et al. Expert Review of Proteomics
- Antibiotic research in the age of omics: from expression profiles to interspecies communication
- (2011) T. Wecke et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Using Ion Mobility Data to Improve Peptide Identification: Intrinsic Amino Acid Size Parameters
- (2011) Stephen J. Valentine et al. JOURNAL OF PROTEOME RESEARCH
- Quantitative Proteomic Analysis ofSalmonella entericaSerovar Typhimurium under PhoP/PhoQ Activation Conditions
- (2011) Jian-Lan Yu et al. JOURNAL OF PROTEOME RESEARCH
- More than 100,000 Detectable Peptide Species Elute in Single Shotgun Proteomics Runs but the Majority is Inaccessible to Data-Dependent LC−MS/MS
- (2011) Annette Michalski et al. JOURNAL OF PROTEOME RESEARCH
- Systematic Comparison of Label-Free, Metabolic Labeling, and Isobaric Chemical Labeling for Quantitative Proteomics on LTQ Orbitrap Velos
- (2011) Zhou Li et al. JOURNAL OF PROTEOME RESEARCH
- Mass Spectrometry-based Proteomics Using Q Exactive, a High-performance Benchtop Quadrupole Orbitrap Mass Spectrometer
- (2011) Annette Michalski et al. MOLECULAR & CELLULAR PROTEOMICS
- Absolute quantification of microbial proteomes at different states by directed mass spectrometry
- (2011) A. Schmidt et al. Molecular Systems Biology
- MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics
- (2011) Lily Ting et al. NATURE METHODS
- Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics
- (2011) Tamar Geiger et al. Nature Protocols
- iTRAQ-Coupled 2-D LC-MS/MS Analysis of Membrane Protein Profile in Escherichia coli Incubated with Apidaecin IB
- (2011) Yusi Zhou et al. PLoS One
- Quantification of proteins using data-independent analysis (MSE) in simple andcomplex samples: A systematic evaluation
- (2011) Yishai Levin et al. PROTEOMICS
- Less label, more free: Approaches in label-free quantitative mass spectrometry
- (2011) Karlie A. Neilson et al. PROTEOMICS
- Proteomic signatures in antibiotic research
- (2011) Michaela Wenzel et al. PROTEOMICS
- One-Dimensional Capillary Liquid Chromatographic Separation Coupled with Tandem Mass Spectrometry Unveils theEscherichia coliProteome on a Microarray Scale
- (2010) Mio Iwasaki et al. ANALYTICAL CHEMISTRY
- Prospects for the Future Using Genomics and Proteomics in Clinical Microbiology
- (2010) Pierre-Edouard Fournier et al. Annual Review of Microbiology
- Peek a peak: a glance at statistics for quantitative label-free proteomics
- (2010) Katharina Podwojski et al. Expert Review of Proteomics
- Role of spectral counting in quantitative proteomics
- (2010) Deborah H Lundgren et al. Expert Review of Proteomics
- High-efficiency liquid chromatography–mass spectrometry separations with 50mm, 250mm, and 1m long polymer-based monolithic capillary columns for the characterization of complex proteolytic digests
- (2010) Sebastiaan Eeltink et al. JOURNAL OF CHROMATOGRAPHY A
- Comparison of surface proteomes of enterotoxigenic (ETEC) and commensal Escherichia coli strains
- (2010) Ulf Sommer et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Improving Protein and Proteome Coverage through Data-Independent Multiplexed Peptide Fragmentation
- (2010) Kevin Blackburn et al. JOURNAL OF PROTEOME RESEARCH
- Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) Applied to Quantitative Proteomics ofBacillus subtilis
- (2010) Boumediene Soufi et al. JOURNAL OF PROTEOME RESEARCH
- Efficient Subfractionation of Gram-Negative Bacteria for Proteomics Studies
- (2010) Marcus Thein et al. JOURNAL OF PROTEOME RESEARCH
- Quantitative Proteomic Analysis of Cell Wall and Plasma Membrane Fractions from Multidrug-ResistantAcinetobacter baumannii
- (2010) Sung-Ho Yun et al. JOURNAL OF PROTEOME RESEARCH
- Multidimensional chromatography coupled to mass spectrometry in analysing complex proteomics samples
- (2010) Péter Horvatovich et al. JOURNAL OF SEPARATION SCIENCE
- Sub-part-per-million Precursor and Product Mass Accuracy for High-throughput Proteomics on an Electron Transfer Dissociation-enabled Orbitrap Mass Spectrometer
- (2010) Craig D. Wenger et al. MOLECULAR & CELLULAR PROTEOMICS
- A Quantitative Proteomics Design for Systematic Identification of Protease Cleavage Events
- (2010) Francis Impens et al. MOLECULAR & CELLULAR PROTEOMICS
- Proteomics on an Orbitrap Benchtop Mass Spectrometer Using All-ion Fragmentation
- (2010) Tamar Geiger et al. MOLECULAR & CELLULAR PROTEOMICS
- Options and considerations when selecting a quantitative proteomics strategy
- (2010) Bruno Domon et al. NATURE BIOTECHNOLOGY
- Super-SILAC mix for quantitative proteomics of human tumor tissue
- (2010) Tamar Geiger et al. NATURE METHODS
- Free computational resources for designing selected reaction monitoring transitions
- (2010) Jennifer A. Cham Mead et al. PROTEOMICS
- Differential proteomic analysis using isotope-coded protein-labeling strategies: Comparison, improvements and application to simulated microgravity effect on Cupriavidus metallidurans CH34
- (2010) Baptiste Leroy et al. PROTEOMICS
- Precursor Acquisition Independent From Ion Count: How to Dive Deeper into the Proteomics Ocean
- (2009) Alexandre Panchaud et al. ANALYTICAL CHEMISTRY
- Hares and tortoises: The high- versus low-throughput proteomic race
- (2009) Marc R. Wilkins ELECTROPHORESIS
- Optimisation of protein extraction and 2-DE for metaproteomics of microbial communities from anaerobic wastewater treatment biofilms
- (2009) Florence Abram et al. ELECTROPHORESIS
- Proteomics data mining
- (2009) Marc Wilkins Expert Review of Proteomics
- A Comparison of Labeling and Label-Free Mass Spectrometry-Based Proteomics Approaches
- (2009) Vibhuti J. Patel et al. JOURNAL OF PROTEOME RESEARCH
- Isotope dilution strategies for absolute quantitative proteomics
- (2009) Virginie Brun et al. Journal of Proteomics
- A Dual Pressure Linear Ion Trap Orbitrap Instrument with Very High Sequencing Speed
- (2009) Jesper V. Olsen et al. MOLECULAR & CELLULAR PROTEOMICS
- Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans
- (2009) Johan Malmström et al. NATURE
- Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics
- (2009) Paul J Boersema et al. Nature Protocols
- Recent developments in public proteomic MS repositories and pipelines
- (2009) Jennifer A. Mead et al. PROTEOMICS
- Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures
- (2009) Guo-Zhong Li et al. PROTEOMICS
- The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS
- (2009) Scott J. Geromanos et al. PROTEOMICS
- A 2D reversed-phase × ion-pair reversed-phase HPLC-MALDI TOF/TOF-MS approach for shotgun proteome analysis
- (2008) Maria Lasaosa et al. ANALYTICAL AND BIOANALYTICAL CHEMISTRY
- Protein Dynamics in Iron-StarvedMycobacterium tuberculosisRevealed by Turnover and Abundance Measurement Using Hybrid-Linear Ion Trap-Fourier Transform Mass Spectrometry
- (2008) Prahlad K. Rao et al. ANALYTICAL CHEMISTRY
- Multidimensional LC Separations in Shotgun Proteomics
- (2008) Akira Motoyama et al. ANALYTICAL CHEMISTRY
- Comparison of Two-Dimensional Fractionation Techniques for Shotgun Proteomics
- (2008) James A. Dowell et al. ANALYTICAL CHEMISTRY
- High accuracy mass spectrometry analysis as a tool to verify and improve gene annotation using Mycobacterium tuberculosis as an example
- (2008) Gustavo A de Souza et al. BMC GENOMICS
- Shotgun metaproteomics of the human distal gut microbiota
- (2008) Nathan C Verberkmoes et al. ISME Journal
- Evaluation of Comprehensive Multidimensional Separations Using Reversed-Phase, Reversed-Phase Liquid Chromatography/Mass Spectrometry for Shotgun Proteomics
- (2008) Tatsuji Nakamura et al. JOURNAL OF PROTEOME RESEARCH
- Comparative LC-MS: A landscape of peaks and valleys
- (2008) Antoine H. P. America et al. PROTEOMICS
- Bacterial membrane proteomics
- (2008) Ansgar Poetsch et al. PROTEOMICS
- Protein Standard Absolute Quantification (PSAQ) for improved investigation of staphylococcal food poisoning outbreaks
- (2008) Alain Dupuis et al. PROTEOMICS
- From complementarity to comprehensiveness - targeting the membrane proteome of growing Bacillus subtilis by divergent approaches
- (2008) Hannes Hahne et al. PROTEOMICS
- A label-free quantification method by MS/MS TIC compared to SILAC and spectral counting in a proteomics screen
- (2008) John M. Asara et al. PROTEOMICS
- Global analysis of cellular protein translation by pulsed SILAC
- (2008) Björn Schwanhäusser et al. PROTEOMICS
- Highly efficient peptide separations in proteomics
- (2007) Koen Sandra et al. JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started