4.7 Article

Luciferase and fluorescent protein as dual reporters analyzing the effect of n-dodecyltrimethylammonium bromide on the physiology of Pseudomonas putida

期刊

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
卷 93, 期 1, 页码 393-400

出版社

SPRINGER
DOI: 10.1007/s00253-011-3663-y

关键词

Bioreporter; Bacterial luciferase; Cationic surfactant; Cyanine fluorescent protein; P. putida

资金

  1. National Natural Science Foundation of China [20676071, 20836004]
  2. National High Technology Research and Development Program of China (863 Project) [2009AA062903]

向作者/读者索取更多资源

With the growing interest in using surfactants to improve microbial cell performance for whole-cell biocatalysis and bioremediation, understanding the interactions between surfactants and bacteria is of great importance. By using cyanine fluorescent protein (CFP) and bacterial luciferase (LUX) as dual bioreporters, the effects of n-dodecyltrimethylammonium bromide (DTAB) on the whole cells and intracellular proteins in Pseudomonas putida cultures were quantitatively and systematically studied. The dual reporter system was shown to be a useful indicator to assess the effect of DTAB treatment on whole-cell metabolic activity, membrane permeability, and cellular enzyme activity. CFP was useful to assess the leakage of intracellular enzymes and the lysis of cells and was able to reflect the activities of most cellular enzymes, while LUX reflected the permeability of cell membranes and cellular metabolic activity. The validity of CFP-LUX dual bioreporters was further confirmed by detecting changes in extracellular proteins, membrane potential, oxygen consumption rate (OUR), and intracellular catechol 2,3-dioxygenase (C23O) activity with the addition of DTAB. The dual LUX-CFP bioreporter is a useful tool for analyzing the surfactant-bacterium interactions for biotechnological applications.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.7
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Biochemistry & Molecular Biology

Construction and characterization of novel bifunctional fusion proteins composed of alcohol dehydrogenase and NADH oxidase with efficient oxidized cofactor regeneration

Xi Wu, Chong Zhang, Xin-Hui Xing, Zhenyu Yun, Lin Zhao, Qi Wu

Summary: In order to enhance the efficiency of oxidized cofactor recycling for the production of aromatic chiral alcohols, a study was conducted to design and construct four novel bifunctional fusion proteins combining ADH and NOX enzymes. The fusion proteins showed improved specific activities for both ADH and NOX moieties, with decreased affinities towards cofactors. Furthermore, the fusion proteins displayed varying effects on the recycling efficiency of the oxidized cofactor during enantioselective oxidation, suggesting potential applications in the biosynthesis of chiral alcohols.

BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY (2022)

Article Biochemical Research Methods

Encoding Genetic Circuits with DNA Barcodes Paves the Way for Machine Learning-Assisted Metabolite Biosensor Response Curve Profiling in Yeast

Yikang Zhou, Yaomeng Yuan, Yinan Wu, Lu Li, Aysha Jameel, Xin-Hui Xing, Chong Zhang

Summary: The article introduces a new workflow for constructing and characterizing a large number of biosensors using DNA trackable assembly method and FACS-seq technology. With this workflow, a malonyl-CoA biosensor with the largest dynamic response range was successfully obtained and the genotype-phenotype relationships of uncharacterized combinations were predicted using machine learning algorithms. The workflow is of great significance for the design, tuning, and profiling of biosensor response curves.

ACS SYNTHETIC BIOLOGY (2022)

Article Biotechnology & Applied Microbiology

Development of a novel platform for recombinant protein production in Corynebacterium glutamicum on ethanol

Xinyu Yu, Xiuxia Liu, Xiong Gao, Xunxun Luo, Yankun Yang, Ye Li, Chunli Liu, Chong Zhang, Zhonghu Bai

Summary: This study presents a novel recombinant protein manufacturing platform that utilizes ethanol as both a delayed carbon source and an inducer. By improving the inducible promoter and optimizing transcriptional engineering, this platform achieves superior protein expression in Corynebacterium glutamicum. Ethanol metabolism is found to be required for the upregulation of the improved promoter. The platform successfully produces the first secretory overexpression of the de novo design protein NEO-2/15.

SYNTHETIC AND SYSTEMS BIOTECHNOLOGY (2022)

Article Food Science & Technology

Improved functional properties of wheat gluten hydrolysate by covalent conjugation with chlorogenic acid

Dong He, Yifan Xing, Yi Wang, Wen Zeng, Wei Gao, Nan Su, Chong Zhang, Haihong Chen, Xin-Hui Xing

Summary: This study demonstrates that covalent modification of wheat gluten hydrolysate with chlorogenic acid improves its functional properties, including thermal stability, emulsifying and foaming capabilities, and antioxidant activity.

INTERNATIONAL JOURNAL OF FOOD SCIENCE AND TECHNOLOGY (2023)

Article Biotechnology & Applied Microbiology

Combining genetically encoded biosensors with droplet microfluidic system for enhanced glutaminase production by Bacillus amyloliquefaciens

Shuang Li, Xi-hao Liao, Xin-yu Yu, Aysha Jameel, Xin-Hui Xing, Zheng-lian Xue, Chong Zhang

Summary: A novel high-throughput screening technology, fluorescence-activated droplet sorting (FADS), combined with a genetically encoded fluorescent biosensor, iGluSnFR, was successfully used to screen variants with high glutaminase production. The strategy significantly improved the screening efficiency and reduced reagent consumption, facilitating the directed evolution of industrial enzymes and cell factories.

BIOCHEMICAL ENGINEERING JOURNAL (2022)

Article Microbiology

Strain-level profiling with picodroplet microfluidic cultivation reveals host-specific adaption of honeybee gut symbionts

Yujie Meng, Shuang Li, Chong Zhang, Hao Zheng

Summary: By using droplet-based microfluidic cultivation, researchers encapsulated and cultivated individual bacterial cells from the honeybee gut, leading to interesting findings. The cultivation technique revealed higher strain-level diversity compared to gut samples, and comparative genomic analysis provided insights into host adaptations.

MICROBIOME (2022)

Article Food Science & Technology

Isolation and characterization of novel peptides from fermented products of Lactobacillus for ulcerative colitis prevention and treatment

Dong He, Wen Zeng, Yi Wang, Yifan Xing, Kang Xiong, Nan Su, Chong Zhang, Yuan Lu, Xinhui Xing

Summary: Ulcerative colitis (UC), an incurable and complex digestive disease, affects millions of people worldwide. This study investigated the potential of bioactive peptides as functional foods or drugs for UC prevention and treatment, with a focus on alcohol-soluble components from fermentation broth by fresh wheat germ and apple (AC-WGAF). Four novel peptides were identified from AC-WGAF, and peptide T24 exhibited the most significant anti-colitis activity. T24 prevented tight junction protein loss, maintained epithelial barrier integrity, and promoted cell proliferation by regulating mitogen-activated protein kinase signaling pathways. Overall, T24 shows promise as a functional food or novel drug for UC prevention and treatment.

FOOD SCIENCE AND HUMAN WELLNESS (2022)

Article Biotechnology & Applied Microbiology

Microbial micro-tube culture system: A miniature bioreactor for controllable bubble-free oxygen supply based on high gas-permeability Teflon tube

Ruirui Li, Xiaojie Guo, Kang Xiong, Xinhui Xing, Chong Zhang

Summary: A novel micro-tube bioreactor (MTB) based on a high gas-permeability Teflon tube was reported, providing controllable and bubble-free oxygen supply with low shear stress during microbial cultivation. The MTB demonstrated improved growth performance compared to conventional shake flasks, including higher incipient growth rate and terminal biomass accumulation. The MTB also enabled high-density microbial cultivation, as evidenced by a tripled biomass accumulation in a fed-batch cultivation of Bacillus subtilis compared to batch mode. Moreover, adaptive evolution against oxygen for Lactobacillus plantarum showed remarkable improvement in growth performance, increasing biomass accumulation by 130-150%, indicating the MTB's potential as a platform for microbial cultivation and adaptive evolution.

BIOCHEMICAL ENGINEERING JOURNAL (2023)

Article Biotechnology & Applied Microbiology

Single-cell microliter-droplet screening system (MISS Cell): An integrated platform for automated high-throughput microbial monoclonal cultivation and picking

Xingjin Jian, Xiaojie Guo, Zhengshuo Cai, Longfeng Wei, Liyan Wang, Xin-hui Xing, Chong Zhang

Summary: A novel integrated platform, the single-cell microliter-droplet screening system (MISS Cell), was developed for automated, high-throughput microbial monoclonal colony cultivation and picking. Compared with solid plates, the MISS Cell generated a larger number of monoclonal colonies with higher initial growth rates using fewer resources. The MISS Cell can serve as a universal platform for efficient monoclonal colony production in high-throughput applications.

BIOTECHNOLOGY AND BIOENGINEERING (2023)

Article Biochemical Research Methods

Sodium formate redirects carbon flux and enhances heterologous mevalonate production in Methylobacterium extorquens AM1

Lan-Yu Cui, Jing Yang, Wei-Fan Liang, Song Yang, Chong Zhang, Xin-Hui Xing

Summary: By adding 10 mmol L-1 sodium formate in the mevalonic acid (MEV) accumulating stage (at 72 h), Methylobacterium extorquens AM1 (AM1) achieved a MEV yield of 0.067 gMEV/g methanol, which is the highest reported yield to date. Sodium formate had global effects on metabolic pathways, significantly increasing the ratios of reducing equivalents, enhancing the metabolic rate of pathways demanding reducing cofactors, and redirecting carbon flux to MEV synthesis. Coupling formate to methanol-based production provides a promising way for converting C1 substances to useful chemical products.

BIOTECHNOLOGY JOURNAL (2023)

Article Engineering, Environmental

Capture-SELEX of DNA Aptamers for Estradiol Specifically and Estrogenic Compounds Collectively

Chenqi Niu, Chong Zhang, Juewen Liu

Summary: This article focuses on the development of new aptamers for estrogenic compounds and their application in the detection of E2 in wastewater. The newly selected aptamers have the advantages of small size and high affinities, and two of them were successfully converted into fluorescent biosensors with low limit of detection.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2022)

Article Biotechnology & Applied Microbiology

CRISPRi-microfluidics screening enables genome-scale target identification for high-titer protein production and secretion

Xinyu Yu, Shuang Li, Huibao Feng, Xihao Liao, Xin-Hui Xing, Zhonghu Bai, Xiuxia Liu, Chong Zhang

Summary: This study developed a CRISPRi-microfluidics screening platform to identify crucial gene targets for enhancing r-protein secretion in Corynebacterium glutamicum. By screening 46,549 single-guide RNAs, unknown targets related to transmembrane transport, amino-acid metabolism, and redox regulation were discovered. These findings were used to construct a hyperproducer for multiple proteins through combinatorial engineering of redox-response transcription factors. The CRISPRi technology and FlAsH-based screening platform used in this study have broad applications for other microbial species and recombinant proteins.

METABOLIC ENGINEERING (2023)

Letter Biology

Cross-species binding spectrum of ACE2 to SARS-CoV-2 RBD

Xihao Liao, Changge Guan, Chenghua Wang, Xinjie Chen, Xiaomei Lin, Lianghua Lu, Lu Li, Ting Wang, Nan Su, Bian Wu, Xinquan Wang, Chong Zhang, Yi Wang, Yuan Lu, Xin-Hui Xing

SCIENCE CHINA-LIFE SCIENCES (2023)

Article Chemistry, Analytical

CRISPR-Cas12a-assisted elimination of the non-specific signal from non-specific amplification in the Exponential Amplification Reaction

Chenqi Niu, Juewen Liu, Xinhui Xing, Chong Zhang

Summary: In this study, a novel strategy was proposed to eliminate the non-specific signal from non-specific amplification by integrating the CRISPR-Cas12a system into two-templates exponential amplification reactions (EXPAR). The developed EXPAR-Cas12a strategy named EXPCas acted as a filter to filter out non-specific amplificons and improved the signal-to-background ratio significantly. With miRNA-21 as the target, the detection could be accomplished in 40 min with a LOD of 103 fM and no non-specific amplification was observed.

ANALYTICA CHIMICA ACTA (2023)

Article Agriculture, Multidisciplinary

Mining and Validation of Novel Hemp Seed-Derived DPP-IV-Inhibiting Peptides Using a Combination of Multi-omics and Molecular Docking

Hai-Hong Chen, Wei Li, Yi Wang, Bing Xu, Xi Hu, Xiao-Bing Li, Jun-Yu Liu, Chong Zhang, Can-Yang Zhang, Xin-Hui Xing

Summary: Through multi-omics technology, 16 potential DPP-IV-inhibiting peptides were identified in hemp seeds. These peptides exhibited strong DPP-IV binding affinity and efficiently inhibited DPP-IV activity, leading to increased insulin and glucagon-like peptide-1 concentrations. This study provides an effective method for the development of food-derived therapeutic DPP-IV-inhibiting peptides.

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2023)

暂无数据