Winter diversity and expression of proteorhodopsin genes in a polar ocean

Diversity and novelty of actinobacteria in Arctic marine sediments

(2014) Gaiyun Zhang et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Diurnal expression of SAR11 proteorhodopsin and 16S rRNA genes in coastal North Atlantic waters

(2014) R Lami et al.   AQUATIC MICROBIAL ECOLOGY

Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria

(2014) S. Yoshizawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microspatial gene expression patterns in the Amazon River Plume

(2014) B. M. Satinsky et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteorhodopsin

(2013) Christian Bamann et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Regulation of proteorhodopsin gene expression by nutrient limitation in the marine bacteriumVibriosp. AND4

(2013) Neelam Akram et al.   ENVIRONMENTAL MICROBIOLOGY

Distribution of acI-Actinorhodopsin genes in Baltic Sea salinity gradients indicates adaptation of facultative freshwater photoheterotrophs to brackish waters

(2013) Ivette Salka et al.   ENVIRONMENTAL MICROBIOLOGY

Genomics and Physiology of a Marine Flavobacterium Encoding a Proteorhodopsin and a Xanthorhodopsin-Like Protein

(2013) Thomas Riedel et al.   PLoS One

Poles Apart: Arctic and Antarctic Octadecabacter strains Share High Genome Plasticity and a New Type of Xanthorhodopsin

(2013) John Vollmers et al.   PLoS One

Deep-Sea Bioluminescence Blooms after Dense Water Formation at the Ocean Surface

(2013) Christian Tamburini et al.   PLoS One

A light-driven sodium ion pump in marine bacteria

(2013) Keiichi Inoue et al.   Nature Communications

Metagenomics uncovers a new group of low GC and ultra-small marine Actinobacteria

(2013) Rohit Ghai et al.   Scientific Reports

Diversity and functional analysis of proteorhodopsin in marine Flavobacteria

(2012) Susumu Yoshizawa et al.   ENVIRONMENTAL MICROBIOLOGY

Global abundance of microbial rhodopsins

(2012) Omri M Finkel et al.   ISME Journal

Pole-to-pole biogeography of surface and deep marine bacterial communities

(2012) J.-F. Ghiglione et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bioenergetics of photoheterotrophic bacteria in the oceans

(2012) David L. Kirchman et al.   Environmental Microbiology Reports

Streamlining and Core Genome Conservation among Highly Divergent Members of the SAR11 Clade

(2012) J. Grote et al.   mBio

Bioluminescence in the high Arctic during the polar night

(2011) J. Berge et al.   MARINE BIOLOGY

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

Energy Starved Candidatus Pelagibacter Ubique Substitutes Light-Mediated ATP Production for Endogenous Carbon Respiration

(2011) Laura Steindler et al.   PLoS One

Protist community composition during spring in an Arctic flaw lead polynya

(2011) Ramon Terrado et al.   POLAR BIOLOGY

Constitutive Expression of the Proteorhodopsin Gene by a Flavobacterium Strain Representative of the Proteorhodopsin-Producing Microbial Community in the North Sea

(2010) T. Riedel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Proteorhodopsin-Bearing Bacteria in Antarctic Sea Ice

(2010) E. Y. Koh et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Importance of Alanine at Position 178 in Proteorhodopsin for Absorption of Prevalent Ambient Light in the Marine Environment

(2010) Keisuke Yamada et al.   BIOCHEMISTRY

Parallelization of the MAFFT multiple sequence alignment program

(2010) Kazutaka Katoh et al.   BIOINFORMATICS

The structure of bacterial communities in the western Arctic Ocean as revealed by pyrosequencing of 16S rRNA genes

(2010) David L. Kirchman et al.   ENVIRONMENTAL MICROBIOLOGY

Proteorhodopsin Phototrophy Promotes Survival of Marine Bacteria during Starvation

(2010) Laura Gómez-Consarnau et al.   PLOS BIOLOGY

Photoheterotrophic Microbes in the Arctic Ocean in Summer and Winter

(2009) M. T. Cottrell et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Light-dependent growth and proteorhodopsin expression byFlavobacteriaand SAR11 in experiments with Delaware coastal waters

(2009) Raphaël Lami et al.   ENVIRONMENTAL MICROBIOLOGY

Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre

(2009) Rachel S. Poretsky et al.   ENVIRONMENTAL MICROBIOLOGY

The seasonal structure of microbial communities in the Western English Channel

(2009) Jack A. Gilbert et al.   ENVIRONMENTAL MICROBIOLOGY

Actinorhodopsin genes discovered in diverse freshwater habitats and among cultivated freshwater Actinobacteria

(2009) Adrian K Sharma et al.   ISME Journal

A High-Throughput DNA Sequence Aligner for Microbial Ecology Studies

(2009) Patrick D. Schloss   PLoS One

Standing stocks, production, and respiration of phytoplankton and heterotrophic bacteria in the western Arctic Ocean

(2008) David L. Kirchman et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Actinorhodopsins: proteorhodopsin-like gene sequences found predominantly in non-marine environments

(2008) Adrian K. Sharma et al.   ENVIRONMENTAL MICROBIOLOGY

Widespread distribution of proteorhodopsins in freshwater and brackish ecosystems

(2008) Nof Atamna-Ismaeel et al.   ISME Journal

Seasonal dynamics of bacterial biomass and production in a coastal arctic ecosystem: Franklin Bay, western Canadian Arctic

(2008) Marie-Ève Garneau et al.   JOURNAL OF GEOPHYSICAL RESEARCH

Proteorhodopsins: an array of physiological roles?

(2008) Jed A. Fuhrman et al.   NATURE REVIEWS MICROBIOLOGY

Microbial community gene expression in ocean surface waters

(2008) J. Frias-Lopez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY