High molecular weight dissolved organic matter enrichment selects for methylotrophs in dilution to extinction cultures

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Discovery of a SAR11 growth requirement for thiamin’s pyrimidine precursor and its distribution in the Sargasso Sea

(2014) Paul Carini et al.   ISME Journal

Linking activity and function to ecosystem dynamics in a coastal bacterioplankton community

(2014) Scott M. Gifford et al.   Frontiers in Microbiology

Distinct dissolved organic matter sources induce rapid transcriptional responses in coexisting populations ofProchlorococcus,Pelagibacterand the OM60 clade

(2013) Adrian K. Sharma et al.   ENVIRONMENTAL MICROBIOLOGY

Phylogenetic and structural response of heterotrophic bacteria to dissolved organic matter of different chemical composition in a continuous culture study

(2013) M. Landa et al.   ENVIRONMENTAL MICROBIOLOGY

Phytoplankton species-specific release of dissolved free amino acids and their selective consumption by bacteria

(2013) Hugo Sarmento et al.   LIMNOLOGY AND OCEANOGRAPHY

When Is a Microbial Culture "Pure"? Persistent Cryptic Contaminant Escapes Detection Even with Deep Genome Sequencing

(2013) P. M. Shrestha et al.   mBio

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Use of phytoplankton-derived dissolved organic carbon by different types of bacterioplankton

(2012) Hugo Sarmento et al.   ENVIRONMENTAL MICROBIOLOGY

Tracking differential incorporation of dissolved organic carbon types among diverse lineages of Sargasso Sea bacterioplankton

(2012) Craig E. Nelson et al.   ENVIRONMENTAL MICROBIOLOGY

Isolation of an aerobic sulfur oxidizer from the SUP05/Arctic96BD-19 clade

(2012) Katharine T Marshall et al.   ISME Journal

Streamlining and Core Genome Conservation among Highly Divergent Members of the SAR11 Clade

(2012) J. Grote et al.   mBio

Genome sequence of strain HIMB624, a cultured representative from the OM43 clade of marine Betaproteobacteria

(2012) Megan J. Huggett et al.   Standards in Genomic Sciences

Isolation and Characterization of a Psychropiezophilic Alphaproteobacterium

(2011) Emiley A. Eloe et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Modularity of methylotrophy, revisited

(2011) Ludmila Chistoserdova   ENVIRONMENTAL MICROBIOLOGY

Synergistic metabolism of a broad range of C1 compounds in the marine methylotrophic bacterium HTCC2181

(2011) Kimberly H. Halsey et al.   ENVIRONMENTAL MICROBIOLOGY

Adaptive seeds tame genomic sequence comparison

(2011) S. M. Kielbasa et al.   GENOME RESEARCH

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

One Carbon Metabolism in SAR11 Pelagic Marine Bacteria

(2011) Jing Sun et al.   PLoS One

Release LTPs104 of the All-Species Living Tree

(2011) Raúl Munoz et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Time-series analyses of Monterey Bay coastal microbial picoplankton using a ‘genome proxy’ microarray

(2010) Virginia I. Rich et al.   ENVIRONMENTAL MICROBIOLOGY

Environmental proteomics of microbial plankton in a highly productive coastal upwelling system

(2010) Sarah M Sowell et al.   ISME Journal

Incorporating sequence quality data into alignment improves DNA read mapping

(2010) Martin C. Frith et al.   NUCLEIC ACIDS RESEARCH

Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea

(2010) J. McCarren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon

(2009) Rachel S. Poretsky et al.   ENVIRONMENTAL MICROBIOLOGY

The presence of the glycolysis operon in SAR11 genomes is positively correlated with ocean productivity

(2009) M. S. Schwalbach et al.   ENVIRONMENTAL MICROBIOLOGY

Enrichment and cultivation of pelagic bacteria from a humic lake using phenol and humic matter additions

(2009) Kristine Michelle L. Hutalle-Schmelzer et al.   FEMS MICROBIOLOGY ECOLOGY

Improved culturability of SAR11 strains in dilution-to-extinction culturing from the East Sea, West Pacific Ocean

(2009) Jaeho Song et al.   FEMS MICROBIOLOGY LETTERS

The small genome of an abundant coastal ocean methylotroph

(2008) Stephen J. Giovannoni et al.   ENVIRONMENTAL MICROBIOLOGY

Simiduia agarivorans gen. nov., sp. nov., a marine, agarolytic bacterium isolated from shallow coastal water from Keelung, Taiwan

(2008) W. Y. Shieh et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Complete Genome Sequence of the Complex Carbohydrate-Degrading Marine Bacterium, Saccharophagus degradans Strain 2-40T

(2008) Ronald M. Weiner et al.   PLoS Genetics